miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 143279 0.7 0.648915
Target:  5'- cGGC-GCCGGcCGCucGggGUCGG-GCGGg -3'
miRNA:   3'- -UCGcCGGCUaGCG--CuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 142942 0.74 0.477504
Target:  5'- aGGUGGCCGAg-GgGAAGUCGGcgGCGu -3'
miRNA:   3'- -UCGCCGGCUagCgCUUCAGCCa-CGCc -5'
11092 3' -58.6 NC_002794.1 + 142349 0.71 0.619629
Target:  5'- aGGCGGCgGAggcgGCGGAGgcggCGGagGCGGa -3'
miRNA:   3'- -UCGCCGgCUag--CGCUUCa---GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 142301 0.68 0.762916
Target:  5'- aGGCGGUacaGGUgGCGGAGgcggCGGcgcagGCGGc -3'
miRNA:   3'- -UCGCCGg--CUAgCGCUUCa---GCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 142193 0.68 0.772814
Target:  5'- gAGCGGCagugCGgGAAGcggcggcggcagcggCGGUGCGGg -3'
miRNA:   3'- -UCGCCGgcuaGCgCUUCa--------------GCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 142130 0.73 0.504873
Target:  5'- cGGCGGCCGAcCGCcGGGUCacgGCGGa -3'
miRNA:   3'- -UCGCCGGCUaGCGcUUCAGccaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 140666 0.71 0.639155
Target:  5'- cAGCuuuugGGUCGggCGC-AGGUCGGUGCGa -3'
miRNA:   3'- -UCG-----CCGGCuaGCGcUUCAGCCACGCc -5'
11092 3' -58.6 NC_002794.1 + 140106 0.66 0.895662
Target:  5'- cGGCGG-CGAUCGaCGgcGgucgaCGGUggGCGGg -3'
miRNA:   3'- -UCGCCgGCUAGC-GCuuCa----GCCA--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 139447 0.68 0.798218
Target:  5'- cGCGcGCCGAUCG-GcAGGUCGucGUGCGc -3'
miRNA:   3'- uCGC-CGGCUAGCgC-UUCAGC--CACGCc -5'
11092 3' -58.6 NC_002794.1 + 139118 0.67 0.81508
Target:  5'- cGCGGgCGAUCaCGGAGaCGGcgucGCGGu -3'
miRNA:   3'- uCGCCgGCUAGcGCUUCaGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 138758 0.78 0.284167
Target:  5'- cGGgGGCCGAgUCGCGGcGGUCGGUGgaGGg -3'
miRNA:   3'- -UCgCCGGCU-AGCGCU-UCAGCCACg-CC- -5'
11092 3' -58.6 NC_002794.1 + 138684 0.7 0.697381
Target:  5'- uGGCGGCgGGUCGUGAugcaaaugAGggCGGcGUGGa -3'
miRNA:   3'- -UCGCCGgCUAGCGCU--------UCa-GCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 129816 0.66 0.868987
Target:  5'- cGCGucuGCCGcaucAUCGCgGAAGUCGaG-GCGGa -3'
miRNA:   3'- uCGC---CGGC----UAGCG-CUUCAGC-CaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 129209 0.69 0.710771
Target:  5'- gAGCGGCCGAcggcgguggauaggCGCGAA--CGG-GCGGc -3'
miRNA:   3'- -UCGCCGGCUa-------------GCGCUUcaGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 128161 0.67 0.830539
Target:  5'- cGGCGGCuCGcgcCGCGGacgGGUCGGUGaccucguCGGu -3'
miRNA:   3'- -UCGCCG-GCua-GCGCU---UCAGCCAC-------GCC- -5'
11092 3' -58.6 NC_002794.1 + 127343 0.66 0.882729
Target:  5'- cGCuGCCGAgacgcUCGCGgcGgCGGcGCGGc -3'
miRNA:   3'- uCGcCGGCU-----AGCGCuuCaGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 126399 0.74 0.45967
Target:  5'- cGGCGGCgugcgcggCGGUCGCGAucuggcugcuGGUCgaGGUGUGGg -3'
miRNA:   3'- -UCGCCG--------GCUAGCGCU----------UCAG--CCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 126250 0.67 0.846935
Target:  5'- cGUGGCg---CGCGAGGUCGGcggcuggcugGCGGc -3'
miRNA:   3'- uCGCCGgcuaGCGCUUCAGCCa---------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 126163 0.72 0.59042
Target:  5'- cGCGGUCuacgCGCaGAGGUCGGUGCu- -3'
miRNA:   3'- uCGCCGGcua-GCG-CUUCAGCCACGcc -5'
11092 3' -58.6 NC_002794.1 + 122975 0.68 0.789578
Target:  5'- gGGUGGCUGuacgCGCGcc--UGGUGCGGg -3'
miRNA:   3'- -UCGCCGGCua--GCGCuucaGCCACGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.