miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 121529 0.66 0.861823
Target:  5'- cGGCGGUCGucUCGaCGGAGccCGGUGaCGa -3'
miRNA:   3'- -UCGCCGGCu-AGC-GCUUCa-GCCAC-GCc -5'
11092 3' -58.6 NC_002794.1 + 120054 0.67 0.823287
Target:  5'- cGGCGGUggCGGcCGCGGAGgccgacgcggCGGUGgCGGc -3'
miRNA:   3'- -UCGCCG--GCUaGCGCUUCa---------GCCAC-GCC- -5'
11092 3' -58.6 NC_002794.1 + 119504 0.66 0.882729
Target:  5'- cGgGGUCGucggcggCGCGGAGcCGGccGCGGa -3'
miRNA:   3'- uCgCCGGCua-----GCGCUUCaGCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 119235 0.68 0.762916
Target:  5'- aGGCGGUCGAggagCGUGuccUCGGcgGCGGc -3'
miRNA:   3'- -UCGCCGGCUa---GCGCuucAGCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 116908 0.75 0.408414
Target:  5'- cGGCGGCCGGUC-CGgcGUCGGcuccgGCGu -3'
miRNA:   3'- -UCGCCGGCUAGcGCuuCAGCCa----CGCc -5'
11092 3' -58.6 NC_002794.1 + 116864 0.7 0.697381
Target:  5'- cGGCGGCCGuGUCGCGcucGUCaGGgggGCGc -3'
miRNA:   3'- -UCGCCGGC-UAGCGCuu-CAG-CCa--CGCc -5'
11092 3' -58.6 NC_002794.1 + 116358 0.67 0.839222
Target:  5'- -aCGGCCGcgCGgucCGAccGGUCGGUggcguGCGGg -3'
miRNA:   3'- ucGCCGGCuaGC---GCU--UCAGCCA-----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 116061 0.66 0.868987
Target:  5'- gAGCGcGaCUGGggUCGCGGAGcgcUCGGcGCGGc -3'
miRNA:   3'- -UCGC-C-GGCU--AGCGCUUC---AGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 113882 0.68 0.806721
Target:  5'- -uCGGCCGcggCGCGc-GUCGGcGCGGu -3'
miRNA:   3'- ucGCCGGCua-GCGCuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 113504 0.67 0.839222
Target:  5'- cGCGGCCGAgagcCGCGGAGggagcuccgcCGGcucgGCGu -3'
miRNA:   3'- uCGCCGGCUa---GCGCUUCa---------GCCa---CGCc -5'
11092 3' -58.6 NC_002794.1 + 112335 0.66 0.868987
Target:  5'- gAGCGcGCCGGcCgGCGgcGcCGGcgGCGGg -3'
miRNA:   3'- -UCGC-CGGCUaG-CGCuuCaGCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 111755 0.67 0.823287
Target:  5'- uGGC-GCCGcgCgGCGccGUCGGgGCGGg -3'
miRNA:   3'- -UCGcCGGCuaG-CGCuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 111631 0.67 0.81508
Target:  5'- cGCGGCCGc-CGCc-GGUCGGgcgccGCGGc -3'
miRNA:   3'- uCGCCGGCuaGCGcuUCAGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 111430 0.67 0.81508
Target:  5'- gAGCcGCCaGAUCG-GcAGUCGGgGCGGg -3'
miRNA:   3'- -UCGcCGG-CUAGCgCuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 111133 0.7 0.696421
Target:  5'- cGGCGGCCGGUgcuccaCGCGGuagcgggucaggcAGacgCGGUGCaGGg -3'
miRNA:   3'- -UCGCCGGCUA------GCGCU-------------UCa--GCCACG-CC- -5'
11092 3' -58.6 NC_002794.1 + 110628 0.67 0.823287
Target:  5'- cGCGGCgccgCGGcgGCGggGUCGGguuucuccgGCGGc -3'
miRNA:   3'- uCGCCG----GCUagCGCuuCAGCCa--------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 110430 0.72 0.59042
Target:  5'- gGGCGGCUG-UCGUc--GUCGGUGgCGGa -3'
miRNA:   3'- -UCGCCGGCuAGCGcuuCAGCCAC-GCC- -5'
11092 3' -58.6 NC_002794.1 + 110246 0.66 0.861823
Target:  5'- cGCGGCgGAgguuucccgCGCGgcGUCGcGacgGCGGc -3'
miRNA:   3'- uCGCCGgCUa--------GCGCuuCAGC-Ca--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 108604 0.79 0.231465
Target:  5'- cGCGGCCGAccuggUCGCGGugguguGUCGGaacUGCGGg -3'
miRNA:   3'- uCGCCGGCU-----AGCGCUu-----CAGCC---ACGCC- -5'
11092 3' -58.6 NC_002794.1 + 108334 0.68 0.798218
Target:  5'- cGGCGGCgcaggaggaGGUgGCGGAG-CGGggaGCGGa -3'
miRNA:   3'- -UCGCCGg--------CUAgCGCUUCaGCCa--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.