miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 11551 0.66 0.882729
Target:  5'- cGCGGCUGGUCGCuaGAAuGUCaGGgGCa- -3'
miRNA:   3'- uCGCCGGCUAGCG--CUU-CAG-CCaCGcc -5'
11092 3' -58.6 NC_002794.1 + 127343 0.66 0.882729
Target:  5'- cGCuGCCGAgacgcUCGCGgcGgCGGcGCGGc -3'
miRNA:   3'- uCGcCGGCU-----AGCGCuuCaGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 41261 0.66 0.895662
Target:  5'- cGGCGGCCcgucGUCGCGcuccGAGaaCGGcgGCGGc -3'
miRNA:   3'- -UCGCCGGc---UAGCGC----UUCa-GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 68313 0.66 0.895662
Target:  5'- uGGCGGCCGA-CGCGuuccgcGGcCuGGUGacCGGg -3'
miRNA:   3'- -UCGCCGGCUaGCGCu-----UCaG-CCAC--GCC- -5'
11092 3' -58.6 NC_002794.1 + 12193 0.66 0.891869
Target:  5'- cGCGGCCGGgcgCcgcucggacgugccgGCGgcGUCGGcggcgccgGCGGc -3'
miRNA:   3'- uCGCCGGCUa--G---------------CGCuuCAGCCa-------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 116061 0.66 0.868987
Target:  5'- gAGCGcGaCUGGggUCGCGGAGcgcUCGGcGCGGc -3'
miRNA:   3'- -UCGC-C-GGCU--AGCGCUUC---AGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 57416 0.66 0.868987
Target:  5'- cGUGGCCGG-CGUGcuGGUCGGcacgGCGc -3'
miRNA:   3'- uCGCCGGCUaGCGCu-UCAGCCa---CGCc -5'
11092 3' -58.6 NC_002794.1 + 116358 0.67 0.839222
Target:  5'- -aCGGCCGcgCGgucCGAccGGUCGGUggcguGCGGg -3'
miRNA:   3'- ucGCCGGCuaGC---GCU--UCAGCCA-----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 55393 0.67 0.85447
Target:  5'- aGGCGGCCGAggCGgcCGAGG-CGGccgagGCGa -3'
miRNA:   3'- -UCGCCGGCUa-GC--GCUUCaGCCa----CGCc -5'
11092 3' -58.6 NC_002794.1 + 26653 0.67 0.85447
Target:  5'- cGGCGGCCGGcucgUCgGCGggGU-GGaGCGc -3'
miRNA:   3'- -UCGCCGGCU----AG-CGCuuCAgCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 105509 0.67 0.85447
Target:  5'- cGCcGCCGGUCGCGccGUCcgaaGCGGa -3'
miRNA:   3'- uCGcCGGCUAGCGCuuCAGcca-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 104496 0.66 0.861096
Target:  5'- cGGCGGCCgGGUCGggcgagaacgggcUGAGGcgCGGguggcGCGGg -3'
miRNA:   3'- -UCGCCGG-CUAGC-------------GCUUCa-GCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 96573 0.67 0.857434
Target:  5'- gAGCGGCUGGUCGUGAccuacaacGUcgaCGGUccgcucuuucuguacGCGGg -3'
miRNA:   3'- -UCGCCGGCUAGCGCUu-------CA---GCCA---------------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 70042 0.67 0.85447
Target:  5'- cAGCaGCacguaGGUCGCccGGUCGG-GCGGc -3'
miRNA:   3'- -UCGcCGg----CUAGCGcuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 110246 0.66 0.861823
Target:  5'- cGCGGCgGAgguuucccgCGCGgcGUCGcGacgGCGGc -3'
miRNA:   3'- uCGCCGgCUa--------GCGCuuCAGC-Ca--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 59195 0.66 0.861823
Target:  5'- uGGCGGUCGA-CGCGcacGUCGGcgucucggccGCGGc -3'
miRNA:   3'- -UCGCCGGCUaGCGCuu-CAGCCa---------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 20375 0.66 0.861823
Target:  5'- uGC-GCCgGAUCGuCGAcG-CGGUGCGGc -3'
miRNA:   3'- uCGcCGG-CUAGC-GCUuCaGCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 156457 0.66 0.861823
Target:  5'- aGGCGGuuGGUUaggggGCGggGgacgaCGGgGCGGc -3'
miRNA:   3'- -UCGCCggCUAG-----CGCuuCa----GCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 121529 0.66 0.861823
Target:  5'- cGGCGGUCGucUCGaCGGAGccCGGUGaCGa -3'
miRNA:   3'- -UCGCCGGCu-AGC-GCUUCa-GCCAC-GCc -5'
11092 3' -58.6 NC_002794.1 + 112335 0.66 0.868987
Target:  5'- gAGCGcGCCGGcCgGCGgcGcCGGcgGCGGg -3'
miRNA:   3'- -UCGC-CGGCUaG-CGCuuCaGCCa-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.