miRNA display CGI


Results 81 - 100 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 90794 0.67 0.81508
Target:  5'- -aCGGUCGAcCGCGAuuuccaGGUgGcGUGCGGa -3'
miRNA:   3'- ucGCCGGCUaGCGCU------UCAgC-CACGCC- -5'
11092 3' -58.6 NC_002794.1 + 139118 0.67 0.81508
Target:  5'- cGCGGgCGAUCaCGGAGaCGGcgucGCGGu -3'
miRNA:   3'- uCGCCgGCUAGcGCUUCaGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 83847 0.67 0.81508
Target:  5'- cGGUcGCCGAUCGgGAagccgucgucccGGUCGGcGCGa -3'
miRNA:   3'- -UCGcCGGCUAGCgCU------------UCAGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 111631 0.67 0.81508
Target:  5'- cGCGGCCGc-CGCc-GGUCGGgcgccGCGGc -3'
miRNA:   3'- uCGCCGGCuaGCGcuUCAGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 111430 0.67 0.81508
Target:  5'- gAGCcGCCaGAUCG-GcAGUCGGgGCGGg -3'
miRNA:   3'- -UCGcCGG-CUAGCgCuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 95780 0.67 0.81508
Target:  5'- cGGCGGCCGGg-GCGAGa--GGcGCGGc -3'
miRNA:   3'- -UCGCCGGCUagCGCUUcagCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 113882 0.68 0.806721
Target:  5'- -uCGGCCGcggCGCGc-GUCGGcGCGGu -3'
miRNA:   3'- ucGCCGGCua-GCGCuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 120054 0.67 0.823287
Target:  5'- cGGCGGUggCGGcCGCGGAGgccgacgcggCGGUGgCGGc -3'
miRNA:   3'- -UCGCCG--GCUaGCGCUUCa---------GCCAC-GCC- -5'
11092 3' -58.6 NC_002794.1 + 128161 0.67 0.830539
Target:  5'- cGGCGGCuCGcgcCGCGGacgGGUCGGUGaccucguCGGu -3'
miRNA:   3'- -UCGCCG-GCua-GCGCU---UCAGCCAC-------GCC- -5'
11092 3' -58.6 NC_002794.1 + 36975 0.67 0.839222
Target:  5'- cGCaGGagGAUCGCGcgcAGGUCGGcgagGCGGa -3'
miRNA:   3'- uCG-CCggCUAGCGC---UUCAGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 26653 0.67 0.85447
Target:  5'- cGGCGGCCGGcucgUCgGCGggGU-GGaGCGc -3'
miRNA:   3'- -UCGCCGGCU----AG-CGCuuCAgCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 55393 0.67 0.85447
Target:  5'- aGGCGGCCGAggCGgcCGAGG-CGGccgagGCGa -3'
miRNA:   3'- -UCGCCGGCUa-GC--GCUUCaGCCa----CGCc -5'
11092 3' -58.6 NC_002794.1 + 116358 0.67 0.839222
Target:  5'- -aCGGCCGcgCGgucCGAccGGUCGGUggcguGCGGg -3'
miRNA:   3'- ucGCCGGCuaGC---GCU--UCAGCCA-----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 52867 0.67 0.846171
Target:  5'- cGCGGCCuuccgguacacccGAUgGUGggGUCGaacGCGGc -3'
miRNA:   3'- uCGCCGG-------------CUAgCGCuuCAGCca-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 126250 0.67 0.846935
Target:  5'- cGUGGCg---CGCGAGGUCGGcggcuggcugGCGGc -3'
miRNA:   3'- uCGCCGgcuaGCGCUUCAGCCa---------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 102358 0.67 0.839222
Target:  5'- cGGCGuGCCGcuUCGUGAAGaCGGUGg-- -3'
miRNA:   3'- -UCGC-CGGCu-AGCGCUUCaGCCACgcc -5'
11092 3' -58.6 NC_002794.1 + 113504 0.67 0.839222
Target:  5'- cGCGGCCGAgagcCGCGGAGggagcuccgcCGGcucgGCGu -3'
miRNA:   3'- uCGCCGGCUa---GCGCUUCa---------GCCa---CGCc -5'
11092 3' -58.6 NC_002794.1 + 67025 0.67 0.839222
Target:  5'- cGGCGGCCGGcucccgccgcgUCGCGGAccCGGcguccGUGGg -3'
miRNA:   3'- -UCGCCGGCU-----------AGCGCUUcaGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 72476 0.67 0.839222
Target:  5'- cGGCGGCgccgaaaagaCGAUCaCGcAGUCGGgcacGCGGc -3'
miRNA:   3'- -UCGCCG----------GCUAGcGCuUCAGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 89374 0.67 0.839222
Target:  5'- aAGCGaGCCGuuUCG-GGAG-CGGUcGCGGu -3'
miRNA:   3'- -UCGC-CGGCu-AGCgCUUCaGCCA-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.