miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 110493 0.66 0.989823
Target:  5'- gGCGGUggCgGCGCcuggagaaagucggUCGA-GAUCGGCg -3'
miRNA:   3'- gCGCCAa-GgCGUGa-------------AGCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 123556 0.66 0.989299
Target:  5'- cCGCGGgcugUUCGC-CUUCGAgCGccaCGGCc -3'
miRNA:   3'- -GCGCCa---AGGCGuGAAGCU-GCua-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 118679 0.66 0.989299
Target:  5'- cCGCGG--CCGC-CgcCGGCGG-CAGCg -3'
miRNA:   3'- -GCGCCaaGGCGuGaaGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 104798 0.66 0.989299
Target:  5'- gGCGGUgCUGCuucgCGAuggccagguCGGUCAGCg -3'
miRNA:   3'- gCGCCAaGGCGugaaGCU---------GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 102632 0.66 0.989299
Target:  5'- gGCGGUcaUCCGCcgGCUggCGGCGcgcUCGGa -3'
miRNA:   3'- gCGCCA--AGGCG--UGAa-GCUGCu--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 114431 0.66 0.989029
Target:  5'- cCGCGGaccagcugCCGCACgUCGugGugcugucgccgCAGCc -3'
miRNA:   3'- -GCGCCaa------GGCGUGaAGCugCua---------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 53539 0.66 0.988892
Target:  5'- gCGCGGcggCCGCACagcccguggacguaGACGGcCAGCu -3'
miRNA:   3'- -GCGCCaa-GGCGUGaag-----------CUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 141461 0.66 0.987897
Target:  5'- gCGCGGcgUCCGgACUggCGAgcaucgugcCGAUCcGCa -3'
miRNA:   3'- -GCGCCa-AGGCgUGAa-GCU---------GCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 38114 0.66 0.987897
Target:  5'- aCGCGGgagagCCGCGCcagcuggggCGugGAgUCgAGCa -3'
miRNA:   3'- -GCGCCaa---GGCGUGaa-------GCugCU-AG-UCG- -5'
11092 5' -53.4 NC_002794.1 + 48723 0.66 0.987897
Target:  5'- gCGCGGauccgaccggCCGCAauaccgggUCGAaCGAUCGGUu -3'
miRNA:   3'- -GCGCCaa--------GGCGUga------AGCU-GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 93995 0.66 0.987897
Target:  5'- gCGCGGacgCCgGCGCcggCGGCGGgcCGGCg -3'
miRNA:   3'- -GCGCCaa-GG-CGUGaa-GCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 112297 0.66 0.987897
Target:  5'- gGCGGccccccgggUCCG-ACUUCGGCGccgaCGGCg -3'
miRNA:   3'- gCGCCa--------AGGCgUGAAGCUGCua--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 184588 0.66 0.987897
Target:  5'- gGCGGccaCGCGCggccgCGG-GAUCGGCa -3'
miRNA:   3'- gCGCCaagGCGUGaa---GCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 110338 0.66 0.987897
Target:  5'- gCGCGGggggucUCCGC-CguggCGACGccucgucgucGUCGGCu -3'
miRNA:   3'- -GCGCCa-----AGGCGuGaa--GCUGC----------UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 193725 0.66 0.987897
Target:  5'- cCGcCGGUguccucgCCGCccgcgGCUUCGGCGAgcgaccgcCGGCc -3'
miRNA:   3'- -GC-GCCAa------GGCG-----UGAAGCUGCUa-------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 110249 0.66 0.986357
Target:  5'- gGCGGagguuucCCGCGCggcgucgCGACGG-CGGCc -3'
miRNA:   3'- gCGCCaa-----GGCGUGaa-----GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 49018 0.66 0.986357
Target:  5'- cCGCGGcggCCGCGgCgucgucCGGCGcggucGUCAGCg -3'
miRNA:   3'- -GCGCCaa-GGCGU-Gaa----GCUGC-----UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 137328 0.66 0.986357
Target:  5'- cCGCGGaaggUUCCGCG----GACGGcUCGGCg -3'
miRNA:   3'- -GCGCC----AAGGCGUgaagCUGCU-AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 58545 0.66 0.986357
Target:  5'- cCGCGGcgCgCGCGCUgcuGGCGcgCuGCg -3'
miRNA:   3'- -GCGCCaaG-GCGUGAag-CUGCuaGuCG- -5'
11092 5' -53.4 NC_002794.1 + 91281 0.66 0.986357
Target:  5'- gCGCGGc-CUGUACgugUCGGCGcUgAGCg -3'
miRNA:   3'- -GCGCCaaGGCGUGa--AGCUGCuAgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.