miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 104798 0.66 0.989299
Target:  5'- gGCGGUgCUGCuucgCGAuggccagguCGGUCAGCg -3'
miRNA:   3'- gCGCCAaGGCGugaaGCU---------GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 102632 0.66 0.989299
Target:  5'- gGCGGUcaUCCGCcgGCUggCGGCGcgcUCGGa -3'
miRNA:   3'- gCGCCA--AGGCG--UGAa-GCUGCu--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 114431 0.66 0.989029
Target:  5'- cCGCGGaccagcugCCGCACgUCGugGugcugucgccgCAGCc -3'
miRNA:   3'- -GCGCCaa------GGCGUGaAGCugCua---------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 193725 0.66 0.987897
Target:  5'- cCGcCGGUguccucgCCGCccgcgGCUUCGGCGAgcgaccgcCGGCc -3'
miRNA:   3'- -GC-GCCAa------GGCG-----UGAAGCUGCUa-------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 53539 0.66 0.988892
Target:  5'- gCGCGGcggCCGCACagcccguggacguaGACGGcCAGCu -3'
miRNA:   3'- -GCGCCaa-GGCGUGaag-----------CUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 38114 0.66 0.987897
Target:  5'- aCGCGGgagagCCGCGCcagcuggggCGugGAgUCgAGCa -3'
miRNA:   3'- -GCGCCaa---GGCGUGaa-------GCugCU-AG-UCG- -5'
11092 5' -53.4 NC_002794.1 + 48723 0.66 0.987897
Target:  5'- gCGCGGauccgaccggCCGCAauaccgggUCGAaCGAUCGGUu -3'
miRNA:   3'- -GCGCCaa--------GGCGUga------AGCU-GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 93995 0.66 0.987897
Target:  5'- gCGCGGacgCCgGCGCcggCGGCGGgcCGGCg -3'
miRNA:   3'- -GCGCCaa-GG-CGUGaa-GCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 112297 0.66 0.987897
Target:  5'- gGCGGccccccgggUCCG-ACUUCGGCGccgaCGGCg -3'
miRNA:   3'- gCGCCa--------AGGCgUGAAGCUGCua--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 184588 0.66 0.987897
Target:  5'- gGCGGccaCGCGCggccgCGG-GAUCGGCa -3'
miRNA:   3'- gCGCCaagGCGUGaa---GCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 110338 0.66 0.987897
Target:  5'- gCGCGGggggucUCCGC-CguggCGACGccucgucgucGUCGGCu -3'
miRNA:   3'- -GCGCCa-----AGGCGuGaa--GCUGC----------UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 131350 0.67 0.978657
Target:  5'- uGaCGGUUUCGCccgugaucaccGCUUCGcccgUGGUCGGCg -3'
miRNA:   3'- gC-GCCAAGGCG-----------UGAAGCu---GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 54924 0.67 0.978657
Target:  5'- aCGCGcagcgUCCGCAgcgCGACcguGGUCAGCu -3'
miRNA:   3'- -GCGCca---AGGCGUgaaGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 179116 0.67 0.978657
Target:  5'- cCGCGG-UCCGgGCgc--GCGGUCGGUc -3'
miRNA:   3'- -GCGCCaAGGCgUGaagcUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 192013 0.67 0.979981
Target:  5'- gGCGGUggCCGCGgCUgcuguuucuguggCGGCGG-CGGCu -3'
miRNA:   3'- gCGCCAa-GGCGU-GAa------------GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 42114 0.67 0.980828
Target:  5'- gGCGGgugaUGUGCUUCGGCGAcgAGUa -3'
miRNA:   3'- gCGCCaag-GCGUGAAGCUGCUagUCG- -5'
11092 5' -53.4 NC_002794.1 + 43183 0.67 0.980828
Target:  5'- aGCGGUUgCGCGCgcCGAcCGGgaaggUGGCg -3'
miRNA:   3'- gCGCCAAgGCGUGaaGCU-GCUa----GUCG- -5'
11092 5' -53.4 NC_002794.1 + 148135 0.67 0.980828
Target:  5'- gCGCGGggCCGCcgggGCgagGGCGGUC-GCg -3'
miRNA:   3'- -GCGCCaaGGCG----UGaagCUGCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 40626 0.67 0.980828
Target:  5'- cCGCGGagUCCGCGag-CGcgagcugaGCGggCAGCg -3'
miRNA:   3'- -GCGCCa-AGGCGUgaaGC--------UGCuaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 145823 0.67 0.978657
Target:  5'- gGCGGcgagCCgaGCGCgUCGACGGUC-GCc -3'
miRNA:   3'- gCGCCaa--GG--CGUGaAGCUGCUAGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.