Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 142248 | 0.67 | 0.973777 |
Target: 5'- gGCGGUgagaCGgACgggaUCGACGAgaucgugCAGCg -3' miRNA: 3'- gCGCCAag--GCgUGa---AGCUGCUa------GUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 22716 | 0.67 | 0.973777 |
Target: 5'- aCGCGGcgCCGagaGCcggCGAaCGGUCGGUc -3' miRNA: 3'- -GCGCCaaGGCg--UGaa-GCU-GCUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 142041 | 0.67 | 0.973777 |
Target: 5'- uCGCGGgaCCGUAC--CGGCGGUucCGGUg -3' miRNA: 3'- -GCGCCaaGGCGUGaaGCUGCUA--GUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 119721 | 0.67 | 0.973777 |
Target: 5'- gGCGGcUUCgGCACcg-GGCGcUCGGCg -3' miRNA: 3'- gCGCC-AAGgCGUGaagCUGCuAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 13269 | 0.67 | 0.973777 |
Target: 5'- uGUGGUggagcggCCGCugUU-GACGG-CGGCa -3' miRNA: 3'- gCGCCAa------GGCGugAAgCUGCUaGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 60432 | 0.67 | 0.976309 |
Target: 5'- aCGCucUUCCGCACcaUCGACGAguaccUCAcGCg -3' miRNA: 3'- -GCGccAAGGCGUGa-AGCUGCU-----AGU-CG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 864 | 0.67 | 0.976309 |
Target: 5'- gCGCGcgcCCGCGa---GGCGGUCGGCg -3' miRNA: 3'- -GCGCcaaGGCGUgaagCUGCUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 40626 | 0.67 | 0.980828 |
Target: 5'- cCGCGGagUCCGCGag-CGcgagcugaGCGggCAGCg -3' miRNA: 3'- -GCGCCa-AGGCGUgaaGC--------UGCuaGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 148135 | 0.67 | 0.980828 |
Target: 5'- gCGCGGggCCGCcgggGCgagGGCGGUC-GCg -3' miRNA: 3'- -GCGCCaaGGCG----UGaagCUGCUAGuCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 43183 | 0.67 | 0.980828 |
Target: 5'- aGCGGUUgCGCGCgcCGAcCGGgaaggUGGCg -3' miRNA: 3'- gCGCCAAgGCGUGaaGCU-GCUa----GUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 42114 | 0.67 | 0.980828 |
Target: 5'- gGCGGgugaUGUGCUUCGGCGAcgAGUa -3' miRNA: 3'- gCGCCaag-GCGUGAAGCUGCUagUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 192013 | 0.67 | 0.979981 |
Target: 5'- gGCGGUggCCGCGgCUgcuguuucuguggCGGCGG-CGGCu -3' miRNA: 3'- gCGCCAa-GGCGU-GAa------------GCUGCUaGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 179116 | 0.67 | 0.978657 |
Target: 5'- cCGCGG-UCCGgGCgc--GCGGUCGGUc -3' miRNA: 3'- -GCGCCaAGGCgUGaagcUGCUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 54924 | 0.67 | 0.978657 |
Target: 5'- aCGCGcagcgUCCGCAgcgCGACcguGGUCAGCu -3' miRNA: 3'- -GCGCca---AGGCGUgaaGCUG---CUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 131350 | 0.67 | 0.978657 |
Target: 5'- uGaCGGUUUCGCccgugaucaccGCUUCGcccgUGGUCGGCg -3' miRNA: 3'- gC-GCCAAGGCG-----------UGAAGCu---GCUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 145823 | 0.67 | 0.978657 |
Target: 5'- gGCGGcgagCCgaGCGCgUCGACGGUC-GCc -3' miRNA: 3'- gCGCCaa--GG--CGUGaAGCUGCUAGuCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 135615 | 0.67 | 0.978657 |
Target: 5'- aGCGGaucggUCGCAggUUGACG-UCGGCg -3' miRNA: 3'- gCGCCaa---GGCGUgaAGCUGCuAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 108803 | 0.67 | 0.97843 |
Target: 5'- gGCGGaUCUacgagguGCaacGCUUCGGCG-UCGGCg -3' miRNA: 3'- gCGCCaAGG-------CG---UGAAGCUGCuAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 139589 | 0.67 | 0.976309 |
Target: 5'- gGCGGUggaugaCGCGgUaacggUCGACcgaGAUCAGCg -3' miRNA: 3'- gCGCCAag----GCGUgA-----AGCUG---CUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 130670 | 0.67 | 0.976309 |
Target: 5'- cCGCGGgcUCCGCcgcgGCcUCGugGGaggcgccgugUCGGCa -3' miRNA: 3'- -GCGCCa-AGGCG----UGaAGCugCU----------AGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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