Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 130670 | 0.67 | 0.976309 |
Target: 5'- cCGCGGgcUCCGCcgcgGCcUCGugGGaggcgccgugUCGGCa -3' miRNA: 3'- -GCGCCa-AGGCG----UGaAGCugCU----------AGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 139589 | 0.67 | 0.976309 |
Target: 5'- gGCGGUggaugaCGCGgUaacggUCGACcgaGAUCAGCg -3' miRNA: 3'- gCGCCAag----GCGUgA-----AGCUG---CUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 108803 | 0.67 | 0.97843 |
Target: 5'- gGCGGaUCUacgagguGCaacGCUUCGGCG-UCGGCg -3' miRNA: 3'- gCGCCaAGG-------CG---UGAAGCUGCuAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 135615 | 0.67 | 0.978657 |
Target: 5'- aGCGGaucggUCGCAggUUGACG-UCGGCg -3' miRNA: 3'- gCGCCaa---GGCGUgaAGCUGCuAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 145823 | 0.67 | 0.978657 |
Target: 5'- gGCGGcgagCCgaGCGCgUCGACGGUC-GCc -3' miRNA: 3'- gCGCCaa--GG--CGUGaAGCUGCUAGuCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 80429 | 0.68 | 0.954367 |
Target: 5'- gGCGGggCCGC-CgcCGGCGGccgccggcccgUCGGCg -3' miRNA: 3'- gCGCCaaGGCGuGaaGCUGCU-----------AGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 94202 | 0.68 | 0.954367 |
Target: 5'- aGCGGU--UGCGCUUgUGACGGUggCGGCg -3' miRNA: 3'- gCGCCAagGCGUGAA-GCUGCUA--GUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 156526 | 0.68 | 0.95038 |
Target: 5'- cCGCGGUgaggguUCCGuCGCgucggcCGugGAuUCGGCa -3' miRNA: 3'- -GCGCCA------AGGC-GUGaa----GCugCU-AGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 113069 | 0.68 | 0.95038 |
Target: 5'- cCGCaGGUacUCCuggaGCGCcUCGGCGAaCGGCg -3' miRNA: 3'- -GCG-CCA--AGG----CGUGaAGCUGCUaGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 118372 | 0.68 | 0.95038 |
Target: 5'- uCGCGGUagagauacugCCGCuCggCGGCGcUCAGCc -3' miRNA: 3'- -GCGCCAa---------GGCGuGaaGCUGCuAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 14472 | 0.68 | 0.95038 |
Target: 5'- aGCGGcgcgCCGCGCUcgcuguucgCGGCGG-CGGCc -3' miRNA: 3'- gCGCCaa--GGCGUGAa--------GCUGCUaGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 90255 | 0.68 | 0.954367 |
Target: 5'- gCGUGGUcUCCGCGCgagugguuUUCGcgcgcGCGGUCgAGCu -3' miRNA: 3'- -GCGCCA-AGGCGUG--------AAGC-----UGCUAG-UCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 63802 | 0.68 | 0.954367 |
Target: 5'- cCGCGacgacGUcCCGCaccgACUUCG-CGAUCGGCc -3' miRNA: 3'- -GCGC-----CAaGGCG----UGAAGCuGCUAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 194926 | 0.68 | 0.960285 |
Target: 5'- aGCGG--CCGCACcagcuccgacggCGACGucGUCAGCa -3' miRNA: 3'- gCGCCaaGGCGUGaa----------GCUGC--UAGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 19482 | 0.68 | 0.958131 |
Target: 5'- cCGcCGGUcgcCCGCAC--CGACGA-CGGCg -3' miRNA: 3'- -GC-GCCAa--GGCGUGaaGCUGCUaGUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 55817 | 0.68 | 0.958131 |
Target: 5'- gCGCGGgcgCGCGCUgauGGCGAagAGCa -3' miRNA: 3'- -GCGCCaagGCGUGAag-CUGCUagUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 179990 | 0.68 | 0.961678 |
Target: 5'- gGCGGUggCCGCGa--CGGCGGgccCGGCc -3' miRNA: 3'- gCGCCAa-GGCGUgaaGCUGCUa--GUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 126291 | 0.68 | 0.96501 |
Target: 5'- uGCuGUgcgCCGCGCgccUGGCGGUgCAGCg -3' miRNA: 3'- gCGcCAa--GGCGUGaa-GCUGCUA-GUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 119988 | 0.68 | 0.96501 |
Target: 5'- aGCGGagCCGCAgcuCUUCGACca--GGCg -3' miRNA: 3'- gCGCCaaGGCGU---GAAGCUGcuagUCG- -5' |
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11092 | 5' | -53.4 | NC_002794.1 | + | 14660 | 0.68 | 0.96501 |
Target: 5'- cCGCGGcgucggUCCGacuCGCggCGGCGGUCGcGCu -3' miRNA: 3'- -GCGCCa-----AGGC---GUGaaGCUGCUAGU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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