miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 10371 0.76 0.651121
Target:  5'- gGUGGaUCCGCACUagcCGACGAUCgaggggaGGCg -3'
miRNA:   3'- gCGCCaAGGCGUGAa--GCUGCUAG-------UCG- -5'
11092 5' -53.4 NC_002794.1 + 121180 0.73 0.769823
Target:  5'- aGCGGgcUCCGCACgaCGAucCGAUCGGg -3'
miRNA:   3'- gCGCCa-AGGCGUGaaGCU--GCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 12773 0.73 0.779063
Target:  5'- cCGCcg--CCGCGCUUCGGCGAgaacgugacgaUCGGCc -3'
miRNA:   3'- -GCGccaaGGCGUGAAGCUGCU-----------AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 17426 0.73 0.779063
Target:  5'- uCGCGGUcUCCGCGCcgcCGGCGcUCGGg -3'
miRNA:   3'- -GCGCCA-AGGCGUGaa-GCUGCuAGUCg -5'
11092 5' -53.4 NC_002794.1 + 61883 0.73 0.797147
Target:  5'- uCGuCGGcgCCGCGCggcgagcgCGGCGAgcgCAGCg -3'
miRNA:   3'- -GC-GCCaaGGCGUGaa------GCUGCUa--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 142791 0.73 0.760464
Target:  5'- gGCGcGUgcagCCGCAgUUCGGCcgGGUCGGCc -3'
miRNA:   3'- gCGC-CAa---GGCGUgAAGCUG--CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 103904 0.73 0.805974
Target:  5'- aGCGGggcgagaacgCCGCGCaacgCGGCGAgCAGCg -3'
miRNA:   3'- gCGCCaa--------GGCGUGaa--GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 37936 0.73 0.797147
Target:  5'- cCGCGGccgcCCGUGCcUCGGCGAcucgcUCGGCg -3'
miRNA:   3'- -GCGCCaa--GGCGUGaAGCUGCU-----AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 89716 0.72 0.846856
Target:  5'- cCGCGGUgccgaUCCGCGCggCGuCGGUCcuuggggauucgcGGCg -3'
miRNA:   3'- -GCGCCA-----AGGCGUGaaGCuGCUAG-------------UCG- -5'
11092 5' -53.4 NC_002794.1 + 65238 0.72 0.823159
Target:  5'- gGCGGUcgCCGCGg--CGGCGAUcCGGCc -3'
miRNA:   3'- gCGCCAa-GGCGUgaaGCUGCUA-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 47904 0.72 0.846064
Target:  5'- gCGCGGUcCCGCACgacccaggcccCGACcccgacgcaGAUCGGCg -3'
miRNA:   3'- -GCGCCAaGGCGUGaa---------GCUG---------CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 181207 0.72 0.823159
Target:  5'- cCGCGGUcuUCCGaaaGCagCGACGAgaucCGGCg -3'
miRNA:   3'- -GCGCCA--AGGCg--UGaaGCUGCUa---GUCG- -5'
11092 5' -53.4 NC_002794.1 + 30065 0.72 0.839665
Target:  5'- cCGCGGggUCCGguCgcccggUCGACGAggcgcgCGGCc -3'
miRNA:   3'- -GCGCCa-AGGCguGa-----AGCUGCUa-----GUCG- -5'
11092 5' -53.4 NC_002794.1 + 37737 0.71 0.863025
Target:  5'- gGCGGcgCCGC-CggCGGCGGcgCGGCg -3'
miRNA:   3'- gCGCCaaGGCGuGaaGCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 37665 0.71 0.855434
Target:  5'- gCGUGcGUUCCGUACUUCuccagcACGGUCcGCg -3'
miRNA:   3'- -GCGC-CAAGGCGUGAAGc-----UGCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 85046 0.71 0.870413
Target:  5'- -uCGGgcCCGCGC-UCGACGAcCGGCc -3'
miRNA:   3'- gcGCCaaGGCGUGaAGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 59196 0.71 0.863025
Target:  5'- gGCGGUcgaCGCGCacgUCGGCGucUCGGCc -3'
miRNA:   3'- gCGCCAag-GCGUGa--AGCUGCu-AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 53112 0.71 0.855434
Target:  5'- gGCGGUUCCGgaGCUcgcgUCGACcg-CGGCg -3'
miRNA:   3'- gCGCCAAGGCg-UGA----AGCUGcuaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 179813 0.71 0.884556
Target:  5'- -aCGGUcucuUCCGCGCacucgUCGGCcucGGUCAGCg -3'
miRNA:   3'- gcGCCA----AGGCGUGa----AGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 136441 0.71 0.855434
Target:  5'- gGCGGcugcgUCCGCugUUgGGucaGGUCGGCg -3'
miRNA:   3'- gCGCCa----AGGCGugAAgCUg--CUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.