Results 61 - 80 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 119721 | 0.67 | 0.973777 |
Target: 5'- gGCGGcUUCgGCACcg-GGCGcUCGGCg -3' miRNA: 3'- gCGCC-AAGgCGUGaagCUGCuAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 130550 | 0.67 | 0.976309 |
Target: 5'- aCGCGGcgucgCCGCGCacgugUUGGCGAggucUCgAGCa -3' miRNA: 3'- -GCGCCaa---GGCGUGa----AGCUGCU----AG-UCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 110627 | 0.67 | 0.976309 |
Target: 5'- cCGCGGcgCCGCGg--CGGCGGggUCGGg -3' miRNA: 3'- -GCGCCaaGGCGUgaaGCUGCU--AGUCg -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 106993 | 0.67 | 0.973777 |
Target: 5'- gGCGGUggCgGCGCUggccgacgCGACGGUgcucaccgCGGCg -3' miRNA: 3'- gCGCCAa-GgCGUGAa-------GCUGCUA--------GUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 60432 | 0.67 | 0.976309 |
Target: 5'- aCGCucUUCCGCACcaUCGACGAguaccUCAcGCg -3' miRNA: 3'- -GCGccAAGGCGUGa-AGCUGCU-----AGU-CG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 864 | 0.67 | 0.976309 |
Target: 5'- gCGCGcgcCCGCGa---GGCGGUCGGCg -3' miRNA: 3'- -GCGCcaaGGCGUgaagCUGCUAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 130670 | 0.67 | 0.976309 |
Target: 5'- cCGCGGgcUCCGCcgcgGCcUCGugGGaggcgccgugUCGGCa -3' miRNA: 3'- -GCGCCa-AGGCG----UGaAGCugCU----------AGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 139589 | 0.67 | 0.976309 |
Target: 5'- gGCGGUggaugaCGCGgUaacggUCGACcgaGAUCAGCg -3' miRNA: 3'- gCGCCAag----GCGUgA-----AGCUG---CUAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 108803 | 0.67 | 0.97843 |
Target: 5'- gGCGGaUCUacgagguGCaacGCUUCGGCG-UCGGCg -3' miRNA: 3'- gCGCCaAGG-------CG---UGAAGCUGCuAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 154364 | 0.67 | 0.976309 |
Target: 5'- gCGCGGUccaggCCGCGgCggCGGCGggCAcGCc -3' miRNA: 3'- -GCGCCAa----GGCGU-GaaGCUGCuaGU-CG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 147602 | 0.67 | 0.976309 |
Target: 5'- uCGCGGUgugcaaUCUGCACUggcaGGCG-UCGGa -3' miRNA: 3'- -GCGCCA------AGGCGUGAag--CUGCuAGUCg -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 126384 | 0.67 | 0.976309 |
Target: 5'- gCGcCGGggCCuGCGCggCGGCGugcgCGGCg -3' miRNA: 3'- -GC-GCCaaGG-CGUGaaGCUGCua--GUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 142041 | 0.67 | 0.973777 |
Target: 5'- uCGCGGgaCCGUAC--CGGCGGUucCGGUg -3' miRNA: 3'- -GCGCCaaGGCGUGaaGCUGCUA--GUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 57170 | 0.67 | 0.969326 |
Target: 5'- gGCGccgCCGCACUUCGugcugcagacgcugcGCGAgcaCAGCc -3' miRNA: 3'- gCGCcaaGGCGUGAAGC---------------UGCUa--GUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 152818 | 0.67 | 0.968133 |
Target: 5'- uCGgGGUgCCGUGCggacaCGGCG-UCAGCg -3' miRNA: 3'- -GCgCCAaGGCGUGaa---GCUGCuAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 22716 | 0.67 | 0.973777 |
Target: 5'- aCGCGGcgCCGagaGCcggCGAaCGGUCGGUc -3' miRNA: 3'- -GCGCCaaGGCg--UGaa-GCU-GCUAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 142248 | 0.67 | 0.973777 |
Target: 5'- gGCGGUgagaCGgACgggaUCGACGAgaucgugCAGCg -3' miRNA: 3'- gCGCCAag--GCgUGa---AGCUGCUa------GUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 180914 | 0.67 | 0.973777 |
Target: 5'- cCGCGGUcucgCCgGCGCcgUCGGaGGUCGGUc -3' miRNA: 3'- -GCGCCAa---GG-CGUGa-AGCUgCUAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 119451 | 0.67 | 0.975569 |
Target: 5'- gGCGGUggCgGCgucgACUUCGACuucuucgacgucuuGGUCGGCu -3' miRNA: 3'- gCGCCAa-GgCG----UGAAGCUG--------------CUAGUCG- -5' |
|||||||
11092 | 5' | -53.4 | NC_002794.1 | + | 34731 | 0.67 | 0.976309 |
Target: 5'- gCGCGGgcggCCGCagaGCgcgCGACGGcgCGGUg -3' miRNA: 3'- -GCGCCaa--GGCG---UGaa-GCUGCUa-GUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home