miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 179813 0.71 0.884556
Target:  5'- -aCGGUcucuUCCGCGCacucgUCGGCcucGGUCAGCg -3'
miRNA:   3'- gcGCCA----AGGCGUGa----AGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 139430 0.7 0.897826
Target:  5'- uGCaGGUcucgugUCCGCGCg-CGcCGAUCGGCa -3'
miRNA:   3'- gCG-CCA------AGGCGUGaaGCuGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 34265 0.7 0.910193
Target:  5'- gGCGGa-CCGCGCgcaGGCGGcCAGCg -3'
miRNA:   3'- gCGCCaaGGCGUGaagCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 180628 0.7 0.910193
Target:  5'- gGCGGcccacCCGCGCUccagaCGACGAgcCAGCg -3'
miRNA:   3'- gCGCCaa---GGCGUGAa----GCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 184466 0.7 0.916031
Target:  5'- cCGCGGg-CCGCGCgaaCGGCGcgCGGg -3'
miRNA:   3'- -GCGCCaaGGCGUGaa-GCUGCuaGUCg -5'
11092 5' -53.4 NC_002794.1 + 109359 0.7 0.916031
Target:  5'- aCGCGGaUCCGCACg-CGuuuaagcuCGAUCuGCu -3'
miRNA:   3'- -GCGCCaAGGCGUGaaGCu-------GCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 53307 0.7 0.921637
Target:  5'- aGCGGUcggCCgGCGCcgCGA-GAUCGGCu -3'
miRNA:   3'- gCGCCAa--GG-CGUGaaGCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 82444 0.69 0.924888
Target:  5'- uCGCGGcUCgGCACggucggcccgaccUCGACGccGUCGGCc -3'
miRNA:   3'- -GCGCCaAGgCGUGa------------AGCUGC--UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 151602 0.69 0.926482
Target:  5'- cCGCGGgcCCGCGgUUCcucggcuGACGGcCGGCa -3'
miRNA:   3'- -GCGCCaaGGCGUgAAG-------CUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 107310 0.69 0.927009
Target:  5'- uCGCGGgggcgccgUCCGCGCgguUCGGCu-UCGGUc -3'
miRNA:   3'- -GCGCCa-------AGGCGUGa--AGCUGcuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 63478 0.69 0.927009
Target:  5'- gGCGGcggCCGC-CgUCGACGAcgccgCGGCg -3'
miRNA:   3'- gCGCCaa-GGCGuGaAGCUGCUa----GUCG- -5'
11092 5' -53.4 NC_002794.1 + 98977 0.69 0.927009
Target:  5'- gGCGGcgCCGUgGCcUCGGUGGUCGGCg -3'
miRNA:   3'- gCGCCaaGGCG-UGaAGCUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 185171 0.69 0.927009
Target:  5'- cCGcCGGcgCgGCGCggUCGgcGCGGUCGGCg -3'
miRNA:   3'- -GC-GCCaaGgCGUGa-AGC--UGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 194115 0.69 0.932148
Target:  5'- uGCGGcaCCGCGCgcaCGGCuGAggCAGCg -3'
miRNA:   3'- gCGCCaaGGCGUGaa-GCUG-CUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 64790 0.69 0.937053
Target:  5'- aCGcCGGUUCCGCGgCgagCGACGccgcggaCGGCg -3'
miRNA:   3'- -GC-GCCAAGGCGU-Gaa-GCUGCua-----GUCG- -5'
11092 5' -53.4 NC_002794.1 + 113432 0.69 0.937053
Target:  5'- gGCGuucugCCGCGCcgucUCGGCGcUCAGCa -3'
miRNA:   3'- gCGCcaa--GGCGUGa---AGCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 184739 0.69 0.937053
Target:  5'- aCGCcaGG-UCCGCGCcgguccagcgUUCcACGGUCAGCg -3'
miRNA:   3'- -GCG--CCaAGGCGUG----------AAGcUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 116006 0.69 0.937053
Target:  5'- cCGCGGagaCCGCGg--UGGCGAUUGGCg -3'
miRNA:   3'- -GCGCCaa-GGCGUgaaGCUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 112744 0.69 0.941725
Target:  5'- gCGCGGUgcUCCGCGg--CGGCGGggUCGGg -3'
miRNA:   3'- -GCGCCA--AGGCGUgaaGCUGCU--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 127368 0.69 0.941725
Target:  5'- gCGCGG--CCGCuCgugUCGGCGGaCGGCa -3'
miRNA:   3'- -GCGCCaaGGCGuGa--AGCUGCUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.