miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 127368 0.69 0.941725
Target:  5'- gCGCGG--CCGCuCgugUCGGCGGaCGGCa -3'
miRNA:   3'- -GCGCCaaGGCGuGa--AGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 190548 0.69 0.946167
Target:  5'- aGCGG-UCCGCGuCcgUCGcCGA-CAGCa -3'
miRNA:   3'- gCGCCaAGGCGU-Ga-AGCuGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 137594 0.69 0.946167
Target:  5'- uGCGGggagCCGC-CgcCGGCGGUCgcGGCg -3'
miRNA:   3'- gCGCCaa--GGCGuGaaGCUGCUAG--UCG- -5'
11092 5' -53.4 NC_002794.1 + 12719 0.69 0.946167
Target:  5'- uGCGcGUUCCGCGg--CGACGAg-GGCc -3'
miRNA:   3'- gCGC-CAAGGCGUgaaGCUGCUagUCG- -5'
11092 5' -53.4 NC_002794.1 + 11273 0.68 0.948722
Target:  5'- aCGCGGUcaccugguggcgcgUCCGCAacaccagccagguCUUCGugGc-CAGCg -3'
miRNA:   3'- -GCGCCA--------------AGGCGU-------------GAAGCugCuaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 156526 0.68 0.95038
Target:  5'- cCGCGGUgaggguUCCGuCGCgucggcCGugGAuUCGGCa -3'
miRNA:   3'- -GCGCCA------AGGC-GUGaa----GCugCU-AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 113069 0.68 0.95038
Target:  5'- cCGCaGGUacUCCuggaGCGCcUCGGCGAaCGGCg -3'
miRNA:   3'- -GCG-CCA--AGG----CGUGaAGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 118372 0.68 0.95038
Target:  5'- uCGCGGUagagauacugCCGCuCggCGGCGcUCAGCc -3'
miRNA:   3'- -GCGCCAa---------GGCGuGaaGCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 14472 0.68 0.95038
Target:  5'- aGCGGcgcgCCGCGCUcgcuguucgCGGCGG-CGGCc -3'
miRNA:   3'- gCGCCaa--GGCGUGAa--------GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 80429 0.68 0.954367
Target:  5'- gGCGGggCCGC-CgcCGGCGGccgccggcccgUCGGCg -3'
miRNA:   3'- gCGCCaaGGCGuGaaGCUGCU-----------AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 94202 0.68 0.954367
Target:  5'- aGCGGU--UGCGCUUgUGACGGUggCGGCg -3'
miRNA:   3'- gCGCCAagGCGUGAA-GCUGCUA--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 90255 0.68 0.954367
Target:  5'- gCGUGGUcUCCGCGCgagugguuUUCGcgcgcGCGGUCgAGCu -3'
miRNA:   3'- -GCGCCA-AGGCGUG--------AAGC-----UGCUAG-UCG- -5'
11092 5' -53.4 NC_002794.1 + 63802 0.68 0.954367
Target:  5'- cCGCGacgacGUcCCGCaccgACUUCG-CGAUCGGCc -3'
miRNA:   3'- -GCGC-----CAaGGCG----UGAAGCuGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 55817 0.68 0.958131
Target:  5'- gCGCGGgcgCGCGCUgauGGCGAagAGCa -3'
miRNA:   3'- -GCGCCaagGCGUGAag-CUGCUagUCG- -5'
11092 5' -53.4 NC_002794.1 + 19482 0.68 0.958131
Target:  5'- cCGcCGGUcgcCCGCAC--CGACGA-CGGCg -3'
miRNA:   3'- -GC-GCCAa--GGCGUGaaGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 194926 0.68 0.960285
Target:  5'- aGCGG--CCGCACcagcuccgacggCGACGucGUCAGCa -3'
miRNA:   3'- gCGCCaaGGCGUGaa----------GCUGC--UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 179990 0.68 0.961678
Target:  5'- gGCGGUggCCGCGa--CGGCGGgccCGGCc -3'
miRNA:   3'- gCGCCAa-GGCGUgaaGCUGCUa--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 126291 0.68 0.96501
Target:  5'- uGCuGUgcgCCGCGCgccUGGCGGUgCAGCg -3'
miRNA:   3'- gCGcCAa--GGCGUGaa-GCUGCUA-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 119988 0.68 0.96501
Target:  5'- aGCGGagCCGCAgcuCUUCGACca--GGCg -3'
miRNA:   3'- gCGCCaaGGCGU---GAAGCUGcuagUCG- -5'
11092 5' -53.4 NC_002794.1 + 14660 0.68 0.96501
Target:  5'- cCGCGGcgucggUCCGacuCGCggCGGCGGUCGcGCu -3'
miRNA:   3'- -GCGCCa-----AGGC---GUGaaGCUGCUAGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.