miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 137328 0.66 0.986357
Target:  5'- cCGCGGaaggUUCCGCG----GACGGcUCGGCg -3'
miRNA:   3'- -GCGCC----AAGGCGUgaagCUGCU-AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 58545 0.66 0.986357
Target:  5'- cCGCGGcgCgCGCGCUgcuGGCGcgCuGCg -3'
miRNA:   3'- -GCGCCaaG-GCGUGAag-CUGCuaGuCG- -5'
11092 5' -53.4 NC_002794.1 + 141596 0.66 0.986357
Target:  5'- cCGCGucgCCGgGCggcUCGGCGAcCGGCu -3'
miRNA:   3'- -GCGCcaaGGCgUGa--AGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 189215 0.66 0.984846
Target:  5'- aGuCGG-UCCGCACcacccgcuccgucgUGACGAUCAGa -3'
miRNA:   3'- gC-GCCaAGGCGUGaa------------GCUGCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 107537 0.66 0.984671
Target:  5'- gCGCGGcgCCG-GCggCGACGAccgCGGUg -3'
miRNA:   3'- -GCGCCaaGGCgUGaaGCUGCUa--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 135742 0.66 0.984671
Target:  5'- uGCcGcgCCGCGCccUCGAgGAUCAGg -3'
miRNA:   3'- gCGcCaaGGCGUGa-AGCUgCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 20035 0.66 0.984671
Target:  5'- gCGCGGUccggaUCGCGC-UCGACcaGAUCGcGCu -3'
miRNA:   3'- -GCGCCAa----GGCGUGaAGCUG--CUAGU-CG- -5'
11092 5' -53.4 NC_002794.1 + 186314 0.66 0.983585
Target:  5'- cCGCGG---CGCGCUcguccuccaacacgaUCGACGG-CGGCg -3'
miRNA:   3'- -GCGCCaagGCGUGA---------------AGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 119916 0.66 0.98283
Target:  5'- aCGcCGGggacaUCCGCACggCGcCGAUCuccAGCc -3'
miRNA:   3'- -GC-GCCa----AGGCGUGaaGCuGCUAG---UCG- -5'
11092 5' -53.4 NC_002794.1 + 184049 0.66 0.98283
Target:  5'- gCGCGG-UCgCGgGCcgCGGCGAagCGGCa -3'
miRNA:   3'- -GCGCCaAG-GCgUGaaGCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 101620 0.66 0.982049
Target:  5'- gGCGGgggugccguuucgUCCGCgagcgugggcggGCgggCGGCGGUUAGCc -3'
miRNA:   3'- gCGCCa------------AGGCG------------UGaa-GCUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 42114 0.67 0.980828
Target:  5'- gGCGGgugaUGUGCUUCGGCGAcgAGUa -3'
miRNA:   3'- gCGCCaag-GCGUGAAGCUGCUagUCG- -5'
11092 5' -53.4 NC_002794.1 + 43183 0.67 0.980828
Target:  5'- aGCGGUUgCGCGCgcCGAcCGGgaaggUGGCg -3'
miRNA:   3'- gCGCCAAgGCGUGaaGCU-GCUa----GUCG- -5'
11092 5' -53.4 NC_002794.1 + 148135 0.67 0.980828
Target:  5'- gCGCGGggCCGCcgggGCgagGGCGGUC-GCg -3'
miRNA:   3'- -GCGCCaaGGCG----UGaagCUGCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 40626 0.67 0.980828
Target:  5'- cCGCGGagUCCGCGag-CGcgagcugaGCGggCAGCg -3'
miRNA:   3'- -GCGCCa-AGGCGUgaaGC--------UGCuaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 137391 0.67 0.980828
Target:  5'- aCGCGGgUCCGguCUgucCGGCG-UCcGCg -3'
miRNA:   3'- -GCGCCaAGGCguGAa--GCUGCuAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 192013 0.67 0.979981
Target:  5'- gGCGGUggCCGCGgCUgcuguuucuguggCGGCGG-CGGCu -3'
miRNA:   3'- gCGCCAa-GGCGU-GAa------------GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 54924 0.67 0.978657
Target:  5'- aCGCGcagcgUCCGCAgcgCGACcguGGUCAGCu -3'
miRNA:   3'- -GCGCca---AGGCGUgaaGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 131350 0.67 0.978657
Target:  5'- uGaCGGUUUCGCccgugaucaccGCUUCGcccgUGGUCGGCg -3'
miRNA:   3'- gC-GCCAAGGCG-----------UGAAGCu---GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 145823 0.67 0.978657
Target:  5'- gGCGGcgagCCgaGCGCgUCGACGGUC-GCc -3'
miRNA:   3'- gCGCCaa--GG--CGUGaAGCUGCUAGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.