miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 54924 0.67 0.978657
Target:  5'- aCGCGcagcgUCCGCAgcgCGACcguGGUCAGCu -3'
miRNA:   3'- -GCGCca---AGGCGUgaaGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 179116 0.67 0.978657
Target:  5'- cCGCGG-UCCGgGCgc--GCGGUCGGUc -3'
miRNA:   3'- -GCGCCaAGGCgUGaagcUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 108803 0.67 0.97843
Target:  5'- gGCGGaUCUacgagguGCaacGCUUCGGCG-UCGGCg -3'
miRNA:   3'- gCGCCaAGG-------CG---UGAAGCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 34731 0.67 0.976309
Target:  5'- gCGCGGgcggCCGCagaGCgcgCGACGGcgCGGUg -3'
miRNA:   3'- -GCGCCaa--GGCG---UGaa-GCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 126384 0.67 0.976309
Target:  5'- gCGcCGGggCCuGCGCggCGGCGugcgCGGCg -3'
miRNA:   3'- -GC-GCCaaGG-CGUGaaGCUGCua--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 147602 0.67 0.976309
Target:  5'- uCGCGGUgugcaaUCUGCACUggcaGGCG-UCGGa -3'
miRNA:   3'- -GCGCCA------AGGCGUGAag--CUGCuAGUCg -5'
11092 5' -53.4 NC_002794.1 + 154364 0.67 0.976309
Target:  5'- gCGCGGUccaggCCGCGgCggCGGCGggCAcGCc -3'
miRNA:   3'- -GCGCCAa----GGCGU-GaaGCUGCuaGU-CG- -5'
11092 5' -53.4 NC_002794.1 + 130550 0.67 0.976309
Target:  5'- aCGCGGcgucgCCGCGCacgugUUGGCGAggucUCgAGCa -3'
miRNA:   3'- -GCGCCaa---GGCGUGa----AGCUGCU----AG-UCG- -5'
11092 5' -53.4 NC_002794.1 + 110627 0.67 0.976309
Target:  5'- cCGCGGcgCCGCGg--CGGCGGggUCGGg -3'
miRNA:   3'- -GCGCCaaGGCGUgaaGCUGCU--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 60432 0.67 0.976309
Target:  5'- aCGCucUUCCGCACcaUCGACGAguaccUCAcGCg -3'
miRNA:   3'- -GCGccAAGGCGUGa-AGCUGCU-----AGU-CG- -5'
11092 5' -53.4 NC_002794.1 + 864 0.67 0.976309
Target:  5'- gCGCGcgcCCGCGa---GGCGGUCGGCg -3'
miRNA:   3'- -GCGCcaaGGCGUgaagCUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 130670 0.67 0.976309
Target:  5'- cCGCGGgcUCCGCcgcgGCcUCGugGGaggcgccgugUCGGCa -3'
miRNA:   3'- -GCGCCa-AGGCG----UGaAGCugCU----------AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 139589 0.67 0.976309
Target:  5'- gGCGGUggaugaCGCGgUaacggUCGACcgaGAUCAGCg -3'
miRNA:   3'- gCGCCAag----GCGUgA-----AGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 119451 0.67 0.975569
Target:  5'- gGCGGUggCgGCgucgACUUCGACuucuucgacgucuuGGUCGGCu -3'
miRNA:   3'- gCGCCAa-GgCG----UGAAGCUG--------------CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 119721 0.67 0.973777
Target:  5'- gGCGGcUUCgGCACcg-GGCGcUCGGCg -3'
miRNA:   3'- gCGCC-AAGgCGUGaagCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 142041 0.67 0.973777
Target:  5'- uCGCGGgaCCGUAC--CGGCGGUucCGGUg -3'
miRNA:   3'- -GCGCCaaGGCGUGaaGCUGCUA--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 22716 0.67 0.973777
Target:  5'- aCGCGGcgCCGagaGCcggCGAaCGGUCGGUc -3'
miRNA:   3'- -GCGCCaaGGCg--UGaa-GCU-GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 142248 0.67 0.973777
Target:  5'- gGCGGUgagaCGgACgggaUCGACGAgaucgugCAGCg -3'
miRNA:   3'- gCGCCAag--GCgUGa---AGCUGCUa------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 106993 0.67 0.973777
Target:  5'- gGCGGUggCgGCGCUggccgacgCGACGGUgcucaccgCGGCg -3'
miRNA:   3'- gCGCCAa-GgCGUGAa-------GCUGCUA--------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 13269 0.67 0.973777
Target:  5'- uGUGGUggagcggCCGCugUU-GACGG-CGGCa -3'
miRNA:   3'- gCGCCAa------GGCGugAAgCUGCUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.