miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 38114 0.66 0.987897
Target:  5'- aCGCGGgagagCCGCGCcagcuggggCGugGAgUCgAGCa -3'
miRNA:   3'- -GCGCCaa---GGCGUGaa-------GCugCU-AG-UCG- -5'
11092 5' -53.4 NC_002794.1 + 40626 0.67 0.980828
Target:  5'- cCGCGGagUCCGCGag-CGcgagcugaGCGggCAGCg -3'
miRNA:   3'- -GCGCCa-AGGCGUgaaGC--------UGCuaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 42114 0.67 0.980828
Target:  5'- gGCGGgugaUGUGCUUCGGCGAcgAGUa -3'
miRNA:   3'- gCGCCaag-GCGUGAAGCUGCUagUCG- -5'
11092 5' -53.4 NC_002794.1 + 43183 0.67 0.980828
Target:  5'- aGCGGUUgCGCGCgcCGAcCGGgaaggUGGCg -3'
miRNA:   3'- gCGCCAAgGCGUGaaGCU-GCUa----GUCG- -5'
11092 5' -53.4 NC_002794.1 + 47904 0.72 0.846064
Target:  5'- gCGCGGUcCCGCACgacccaggcccCGACcccgacgcaGAUCGGCg -3'
miRNA:   3'- -GCGCCAaGGCGUGaa---------GCUG---------CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 48723 0.66 0.987897
Target:  5'- gCGCGGauccgaccggCCGCAauaccgggUCGAaCGAUCGGUu -3'
miRNA:   3'- -GCGCCaa--------GGCGUga------AGCU-GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 49018 0.66 0.986357
Target:  5'- cCGCGGcggCCGCGgCgucgucCGGCGcggucGUCAGCg -3'
miRNA:   3'- -GCGCCaa-GGCGU-Gaa----GCUGC-----UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 53112 0.71 0.855434
Target:  5'- gGCGGUUCCGgaGCUcgcgUCGACcg-CGGCg -3'
miRNA:   3'- gCGCCAAGGCg-UGA----AGCUGcuaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 53307 0.7 0.921637
Target:  5'- aGCGGUcggCCgGCGCcgCGA-GAUCGGCu -3'
miRNA:   3'- gCGCCAa--GG-CGUGaaGCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 53539 0.66 0.988892
Target:  5'- gCGCGGcggCCGCACagcccguggacguaGACGGcCAGCu -3'
miRNA:   3'- -GCGCCaa-GGCGUGaag-----------CUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 54924 0.67 0.978657
Target:  5'- aCGCGcagcgUCCGCAgcgCGACcguGGUCAGCu -3'
miRNA:   3'- -GCGCca---AGGCGUgaaGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 55817 0.68 0.958131
Target:  5'- gCGCGGgcgCGCGCUgauGGCGAagAGCa -3'
miRNA:   3'- -GCGCCaagGCGUGAag-CUGCUagUCG- -5'
11092 5' -53.4 NC_002794.1 + 57170 0.67 0.969326
Target:  5'- gGCGccgCCGCACUUCGugcugcagacgcugcGCGAgcaCAGCc -3'
miRNA:   3'- gCGCcaaGGCGUGAAGC---------------UGCUa--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 58545 0.66 0.986357
Target:  5'- cCGCGGcgCgCGCGCUgcuGGCGcgCuGCg -3'
miRNA:   3'- -GCGCCaaG-GCGUGAag-CUGCuaGuCG- -5'
11092 5' -53.4 NC_002794.1 + 59196 0.71 0.863025
Target:  5'- gGCGGUcgaCGCGCacgUCGGCGucUCGGCc -3'
miRNA:   3'- gCGCCAag-GCGUGa--AGCUGCu-AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 60432 0.67 0.976309
Target:  5'- aCGCucUUCCGCACcaUCGACGAguaccUCAcGCg -3'
miRNA:   3'- -GCGccAAGGCGUGa-AGCUGCU-----AGU-CG- -5'
11092 5' -53.4 NC_002794.1 + 61883 0.73 0.797147
Target:  5'- uCGuCGGcgCCGCGCggcgagcgCGGCGAgcgCAGCg -3'
miRNA:   3'- -GC-GCCaaGGCGUGaa------GCUGCUa--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 63478 0.69 0.927009
Target:  5'- gGCGGcggCCGC-CgUCGACGAcgccgCGGCg -3'
miRNA:   3'- gCGCCaa-GGCGuGaAGCUGCUa----GUCG- -5'
11092 5' -53.4 NC_002794.1 + 63802 0.68 0.954367
Target:  5'- cCGCGacgacGUcCCGCaccgACUUCG-CGAUCGGCc -3'
miRNA:   3'- -GCGC-----CAaGGCG----UGAAGCuGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 64790 0.69 0.937053
Target:  5'- aCGcCGGUUCCGCGgCgagCGACGccgcggaCGGCg -3'
miRNA:   3'- -GC-GCCAAGGCGU-Gaa-GCUGCua-----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.