miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 65238 0.72 0.823159
Target:  5'- gGCGGUcgCCGCGg--CGGCGAUcCGGCc -3'
miRNA:   3'- gCGCCAa-GGCGUgaaGCUGCUA-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 80429 0.68 0.954367
Target:  5'- gGCGGggCCGC-CgcCGGCGGccgccggcccgUCGGCg -3'
miRNA:   3'- gCGCCaaGGCGuGaaGCUGCU-----------AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 82444 0.69 0.924888
Target:  5'- uCGCGGcUCgGCACggucggcccgaccUCGACGccGUCGGCc -3'
miRNA:   3'- -GCGCCaAGgCGUGa------------AGCUGC--UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 85046 0.71 0.870413
Target:  5'- -uCGGgcCCGCGC-UCGACGAcCGGCc -3'
miRNA:   3'- gcGCCaaGGCGUGaAGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 88075 0.67 0.968133
Target:  5'- gGCGGggCCGCGgUUUGAacggggcguggUGAUgAGCu -3'
miRNA:   3'- gCGCCaaGGCGUgAAGCU-----------GCUAgUCG- -5'
11092 5' -53.4 NC_002794.1 + 89716 0.72 0.846856
Target:  5'- cCGCGGUgccgaUCCGCGCggCGuCGGUCcuuggggauucgcGGCg -3'
miRNA:   3'- -GCGCCA-----AGGCGUGaaGCuGCUAG-------------UCG- -5'
11092 5' -53.4 NC_002794.1 + 90255 0.68 0.954367
Target:  5'- gCGUGGUcUCCGCGCgagugguuUUCGcgcgcGCGGUCgAGCu -3'
miRNA:   3'- -GCGCCA-AGGCGUG--------AAGC-----UGCUAG-UCG- -5'
11092 5' -53.4 NC_002794.1 + 90480 0.71 0.877592
Target:  5'- gGCGGggCCGC-CguccCGcGCGAUCGGCc -3'
miRNA:   3'- gCGCCaaGGCGuGaa--GC-UGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 91281 0.66 0.986357
Target:  5'- gCGCGGc-CUGUACgugUCGGCGcUgAGCg -3'
miRNA:   3'- -GCGCCaaGGCGUGa--AGCUGCuAgUCG- -5'
11092 5' -53.4 NC_002794.1 + 93995 0.66 0.987897
Target:  5'- gCGCGGacgCCgGCGCcggCGGCGGgcCGGCg -3'
miRNA:   3'- -GCGCCaa-GG-CGUGaa-GCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 94202 0.68 0.954367
Target:  5'- aGCGGU--UGCGCUUgUGACGGUggCGGCg -3'
miRNA:   3'- gCGCCAagGCGUGAA-GCUGCUA--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 95760 0.66 0.986357
Target:  5'- uCGCGGggCgGCgGCcgCGACGG-CGGCc -3'
miRNA:   3'- -GCGCCaaGgCG-UGaaGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 98977 0.69 0.927009
Target:  5'- gGCGGcgCCGUgGCcUCGGUGGUCGGCg -3'
miRNA:   3'- gCGCCaaGGCG-UGaAGCUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 101620 0.66 0.982049
Target:  5'- gGCGGgggugccguuucgUCCGCgagcgugggcggGCgggCGGCGGUUAGCc -3'
miRNA:   3'- gCGCCa------------AGGCG------------UGaa-GCUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 102632 0.66 0.989299
Target:  5'- gGCGGUcaUCCGCcgGCUggCGGCGcgcUCGGa -3'
miRNA:   3'- gCGCCA--AGGCG--UGAa-GCUGCu--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 103904 0.73 0.805974
Target:  5'- aGCGGggcgagaacgCCGCGCaacgCGGCGAgCAGCg -3'
miRNA:   3'- gCGCCaa--------GGCGUGaa--GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 104798 0.66 0.989299
Target:  5'- gGCGGUgCUGCuucgCGAuggccagguCGGUCAGCg -3'
miRNA:   3'- gCGCCAaGGCGugaaGCU---------GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 106993 0.67 0.973777
Target:  5'- gGCGGUggCgGCGCUggccgacgCGACGGUgcucaccgCGGCg -3'
miRNA:   3'- gCGCCAa-GgCGUGAa-------GCUGCUA--------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 107310 0.69 0.927009
Target:  5'- uCGCGGgggcgccgUCCGCGCgguUCGGCu-UCGGUc -3'
miRNA:   3'- -GCGCCa-------AGGCGUGa--AGCUGcuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 107537 0.66 0.984671
Target:  5'- gCGCGGcgCCG-GCggCGACGAccgCGGUg -3'
miRNA:   3'- -GCGCCaaGGCgUGaaGCUGCUa--GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.