miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 108803 0.67 0.97843
Target:  5'- gGCGGaUCUacgagguGCaacGCUUCGGCG-UCGGCg -3'
miRNA:   3'- gCGCCaAGG-------CG---UGAAGCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 109359 0.7 0.916031
Target:  5'- aCGCGGaUCCGCACg-CGuuuaagcuCGAUCuGCu -3'
miRNA:   3'- -GCGCCaAGGCGUGaaGCu-------GCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 110249 0.66 0.986357
Target:  5'- gGCGGagguuucCCGCGCggcgucgCGACGG-CGGCc -3'
miRNA:   3'- gCGCCaa-----GGCGUGaa-----GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 110338 0.66 0.987897
Target:  5'- gCGCGGggggucUCCGC-CguggCGACGccucgucgucGUCGGCu -3'
miRNA:   3'- -GCGCCa-----AGGCGuGaa--GCUGC----------UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 110493 0.66 0.989823
Target:  5'- gGCGGUggCgGCGCcuggagaaagucggUCGA-GAUCGGCg -3'
miRNA:   3'- gCGCCAa-GgCGUGa-------------AGCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 110627 0.67 0.976309
Target:  5'- cCGCGGcgCCGCGg--CGGCGGggUCGGg -3'
miRNA:   3'- -GCGCCaaGGCGUgaaGCUGCU--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 112297 0.66 0.987897
Target:  5'- gGCGGccccccgggUCCG-ACUUCGGCGccgaCGGCg -3'
miRNA:   3'- gCGCCa--------AGGCgUGAAGCUGCua--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 112744 0.69 0.941725
Target:  5'- gCGCGGUgcUCCGCGg--CGGCGGggUCGGg -3'
miRNA:   3'- -GCGCCA--AGGCGUgaaGCUGCU--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 113069 0.68 0.95038
Target:  5'- cCGCaGGUacUCCuggaGCGCcUCGGCGAaCGGCg -3'
miRNA:   3'- -GCG-CCA--AGG----CGUGaAGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 113432 0.69 0.937053
Target:  5'- gGCGuucugCCGCGCcgucUCGGCGcUCAGCa -3'
miRNA:   3'- gCGCcaa--GGCGUGa---AGCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 114431 0.66 0.989029
Target:  5'- cCGCGGaccagcugCCGCACgUCGugGugcugucgccgCAGCc -3'
miRNA:   3'- -GCGCCaa------GGCGUGaAGCugCua---------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 116006 0.69 0.937053
Target:  5'- cCGCGGagaCCGCGg--UGGCGAUUGGCg -3'
miRNA:   3'- -GCGCCaa-GGCGUgaaGCUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 118372 0.68 0.95038
Target:  5'- uCGCGGUagagauacugCCGCuCggCGGCGcUCAGCc -3'
miRNA:   3'- -GCGCCAa---------GGCGuGaaGCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 118679 0.66 0.989299
Target:  5'- cCGCGG--CCGC-CgcCGGCGG-CAGCg -3'
miRNA:   3'- -GCGCCaaGGCGuGaaGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 119451 0.67 0.975569
Target:  5'- gGCGGUggCgGCgucgACUUCGACuucuucgacgucuuGGUCGGCu -3'
miRNA:   3'- gCGCCAa-GgCG----UGAAGCUG--------------CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 119721 0.67 0.973777
Target:  5'- gGCGGcUUCgGCACcg-GGCGcUCGGCg -3'
miRNA:   3'- gCGCC-AAGgCGUGaagCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 119916 0.66 0.98283
Target:  5'- aCGcCGGggacaUCCGCACggCGcCGAUCuccAGCc -3'
miRNA:   3'- -GC-GCCa----AGGCGUGaaGCuGCUAG---UCG- -5'
11092 5' -53.4 NC_002794.1 + 119988 0.68 0.96501
Target:  5'- aGCGGagCCGCAgcuCUUCGACca--GGCg -3'
miRNA:   3'- gCGCCaaGGCGU---GAAGCUGcuagUCG- -5'
11092 5' -53.4 NC_002794.1 + 121180 0.73 0.769823
Target:  5'- aGCGGgcUCCGCACgaCGAucCGAUCGGg -3'
miRNA:   3'- gCGCCa-AGGCGUGaaGCU--GCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 123556 0.66 0.989299
Target:  5'- cCGCGGgcugUUCGC-CUUCGAgCGccaCGGCc -3'
miRNA:   3'- -GCGCCa---AGGCGuGAAGCU-GCua-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.