miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 194926 0.68 0.960285
Target:  5'- aGCGG--CCGCACcagcuccgacggCGACGucGUCAGCa -3'
miRNA:   3'- gCGCCaaGGCGUGaa----------GCUGC--UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 194115 0.69 0.932148
Target:  5'- uGCGGcaCCGCGCgcaCGGCuGAggCAGCg -3'
miRNA:   3'- gCGCCaaGGCGUGaa-GCUG-CUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 193725 0.66 0.987897
Target:  5'- cCGcCGGUguccucgCCGCccgcgGCUUCGGCGAgcgaccgcCGGCc -3'
miRNA:   3'- -GC-GCCAa------GGCG-----UGAAGCUGCUa-------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 192013 0.67 0.979981
Target:  5'- gGCGGUggCCGCGgCUgcuguuucuguggCGGCGG-CGGCu -3'
miRNA:   3'- gCGCCAa-GGCGU-GAa------------GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 190548 0.69 0.946167
Target:  5'- aGCGG-UCCGCGuCcgUCGcCGA-CAGCa -3'
miRNA:   3'- gCGCCaAGGCGU-Ga-AGCuGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 189215 0.66 0.984846
Target:  5'- aGuCGG-UCCGCACcacccgcuccgucgUGACGAUCAGa -3'
miRNA:   3'- gC-GCCaAGGCGUGaa------------GCUGCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 186314 0.66 0.983585
Target:  5'- cCGCGG---CGCGCUcguccuccaacacgaUCGACGG-CGGCg -3'
miRNA:   3'- -GCGCCaagGCGUGA---------------AGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 185171 0.69 0.927009
Target:  5'- cCGcCGGcgCgGCGCggUCGgcGCGGUCGGCg -3'
miRNA:   3'- -GC-GCCaaGgCGUGa-AGC--UGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 184739 0.69 0.937053
Target:  5'- aCGCcaGG-UCCGCGCcgguccagcgUUCcACGGUCAGCg -3'
miRNA:   3'- -GCG--CCaAGGCGUG----------AAGcUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 184588 0.66 0.987897
Target:  5'- gGCGGccaCGCGCggccgCGG-GAUCGGCa -3'
miRNA:   3'- gCGCCaagGCGUGaa---GCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 184466 0.7 0.916031
Target:  5'- cCGCGGg-CCGCGCgaaCGGCGcgCGGg -3'
miRNA:   3'- -GCGCCaaGGCGUGaa-GCUGCuaGUCg -5'
11092 5' -53.4 NC_002794.1 + 184049 0.66 0.98283
Target:  5'- gCGCGG-UCgCGgGCcgCGGCGAagCGGCa -3'
miRNA:   3'- -GCGCCaAG-GCgUGaaGCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 181207 0.72 0.823159
Target:  5'- cCGCGGUcuUCCGaaaGCagCGACGAgaucCGGCg -3'
miRNA:   3'- -GCGCCA--AGGCg--UGaaGCUGCUa---GUCG- -5'
11092 5' -53.4 NC_002794.1 + 180914 0.67 0.973777
Target:  5'- cCGCGGUcucgCCgGCGCcgUCGGaGGUCGGUc -3'
miRNA:   3'- -GCGCCAa---GG-CGUGa-AGCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 180734 0.69 0.941725
Target:  5'- gCGCGGacgacgCCGUccgGCUccUCGGCGGcuUCGGCg -3'
miRNA:   3'- -GCGCCaa----GGCG---UGA--AGCUGCU--AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 180628 0.7 0.910193
Target:  5'- gGCGGcccacCCGCGCUccagaCGACGAgcCAGCg -3'
miRNA:   3'- gCGCCaa---GGCGUGAa----GCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 179990 0.68 0.961678
Target:  5'- gGCGGUggCCGCGa--CGGCGGgccCGGCc -3'
miRNA:   3'- gCGCCAa-GGCGUgaaGCUGCUa--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 179813 0.71 0.884556
Target:  5'- -aCGGUcucuUCCGCGCacucgUCGGCcucGGUCAGCg -3'
miRNA:   3'- gcGCCA----AGGCGUGa----AGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 179116 0.67 0.978657
Target:  5'- cCGCGG-UCCGgGCgc--GCGGUCGGUc -3'
miRNA:   3'- -GCGCCaAGGCgUGaagcUGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 156526 0.68 0.95038
Target:  5'- cCGCGGUgaggguUCCGuCGCgucggcCGugGAuUCGGCa -3'
miRNA:   3'- -GCGCCA------AGGC-GUGaa----GCugCU-AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.