miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 154364 0.67 0.976309
Target:  5'- gCGCGGUccaggCCGCGgCggCGGCGggCAcGCc -3'
miRNA:   3'- -GCGCCAa----GGCGU-GaaGCUGCuaGU-CG- -5'
11092 5' -53.4 NC_002794.1 + 152818 0.67 0.968133
Target:  5'- uCGgGGUgCCGUGCggacaCGGCG-UCAGCg -3'
miRNA:   3'- -GCgCCAaGGCGUGaa---GCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 151602 0.69 0.926482
Target:  5'- cCGCGGgcCCGCGgUUCcucggcuGACGGcCGGCa -3'
miRNA:   3'- -GCGCCaaGGCGUgAAG-------CUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 148135 0.67 0.980828
Target:  5'- gCGCGGggCCGCcgggGCgagGGCGGUC-GCg -3'
miRNA:   3'- -GCGCCaaGGCG----UGaagCUGCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 147602 0.67 0.976309
Target:  5'- uCGCGGUgugcaaUCUGCACUggcaGGCG-UCGGa -3'
miRNA:   3'- -GCGCCA------AGGCGUGAag--CUGCuAGUCg -5'
11092 5' -53.4 NC_002794.1 + 145823 0.67 0.978657
Target:  5'- gGCGGcgagCCgaGCGCgUCGACGGUC-GCc -3'
miRNA:   3'- gCGCCaa--GG--CGUGaAGCUGCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 142791 0.73 0.760464
Target:  5'- gGCGcGUgcagCCGCAgUUCGGCcgGGUCGGCc -3'
miRNA:   3'- gCGC-CAa---GGCGUgAAGCUG--CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 142248 0.67 0.973777
Target:  5'- gGCGGUgagaCGgACgggaUCGACGAgaucgugCAGCg -3'
miRNA:   3'- gCGCCAag--GCgUGa---AGCUGCUa------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 142041 0.67 0.973777
Target:  5'- uCGCGGgaCCGUAC--CGGCGGUucCGGUg -3'
miRNA:   3'- -GCGCCaaGGCGUGaaGCUGCUA--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 141596 0.66 0.986357
Target:  5'- cCGCGucgCCGgGCggcUCGGCGAcCGGCu -3'
miRNA:   3'- -GCGCcaaGGCgUGa--AGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 141461 0.66 0.987897
Target:  5'- gCGCGGcgUCCGgACUggCGAgcaucgugcCGAUCcGCa -3'
miRNA:   3'- -GCGCCa-AGGCgUGAa-GCU---------GCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 139589 0.67 0.976309
Target:  5'- gGCGGUggaugaCGCGgUaacggUCGACcgaGAUCAGCg -3'
miRNA:   3'- gCGCCAag----GCGUgA-----AGCUG---CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 139430 0.7 0.897826
Target:  5'- uGCaGGUcucgugUCCGCGCg-CGcCGAUCGGCa -3'
miRNA:   3'- gCG-CCA------AGGCGUGaaGCuGCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 137594 0.69 0.946167
Target:  5'- uGCGGggagCCGC-CgcCGGCGGUCgcGGCg -3'
miRNA:   3'- gCGCCaa--GGCGuGaaGCUGCUAG--UCG- -5'
11092 5' -53.4 NC_002794.1 + 137391 0.67 0.980828
Target:  5'- aCGCGGgUCCGguCUgucCGGCG-UCcGCg -3'
miRNA:   3'- -GCGCCaAGGCguGAa--GCUGCuAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 137328 0.66 0.986357
Target:  5'- cCGCGGaaggUUCCGCG----GACGGcUCGGCg -3'
miRNA:   3'- -GCGCC----AAGGCGUgaagCUGCU-AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 136441 0.71 0.855434
Target:  5'- gGCGGcugcgUCCGCugUUgGGucaGGUCGGCg -3'
miRNA:   3'- gCGCCa----AGGCGugAAgCUg--CUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 135742 0.66 0.984671
Target:  5'- uGCcGcgCCGCGCccUCGAgGAUCAGg -3'
miRNA:   3'- gCGcCaaGGCGUGa-AGCUgCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 135615 0.67 0.978657
Target:  5'- aGCGGaucggUCGCAggUUGACG-UCGGCg -3'
miRNA:   3'- gCGCCaa---GGCGUgaAGCUGCuAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 131350 0.67 0.978657
Target:  5'- uGaCGGUUUCGCccgugaucaccGCUUCGcccgUGGUCGGCg -3'
miRNA:   3'- gC-GCCAAGGCG-----------UGAAGCu---GCUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.