miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 5' -53.4 NC_002794.1 + 114431 0.66 0.989029
Target:  5'- cCGCGGaccagcugCCGCACgUCGugGugcugucgccgCAGCc -3'
miRNA:   3'- -GCGCCaa------GGCGUGaAGCugCua---------GUCG- -5'
11092 5' -53.4 NC_002794.1 + 102632 0.66 0.989299
Target:  5'- gGCGGUcaUCCGCcgGCUggCGGCGcgcUCGGa -3'
miRNA:   3'- gCGCCA--AGGCG--UGAa-GCUGCu--AGUCg -5'
11092 5' -53.4 NC_002794.1 + 104798 0.66 0.989299
Target:  5'- gGCGGUgCUGCuucgCGAuggccagguCGGUCAGCg -3'
miRNA:   3'- gCGCCAaGGCGugaaGCU---------GCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 118679 0.66 0.989299
Target:  5'- cCGCGG--CCGC-CgcCGGCGG-CAGCg -3'
miRNA:   3'- -GCGCCaaGGCGuGaaGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 110493 0.66 0.989823
Target:  5'- gGCGGUggCgGCGCcuggagaaagucggUCGA-GAUCGGCg -3'
miRNA:   3'- gCGCCAa-GgCGUGa-------------AGCUgCUAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 141596 0.66 0.986357
Target:  5'- cCGCGucgCCGgGCggcUCGGCGAcCGGCu -3'
miRNA:   3'- -GCGCcaaGGCgUGa--AGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 141461 0.66 0.987897
Target:  5'- gCGCGGcgUCCGgACUggCGAgcaucgugcCGAUCcGCa -3'
miRNA:   3'- -GCGCCa-AGGCgUGAa-GCU---------GCUAGuCG- -5'
11092 5' -53.4 NC_002794.1 + 184049 0.66 0.98283
Target:  5'- gCGCGG-UCgCGgGCcgCGGCGAagCGGCa -3'
miRNA:   3'- -GCGCCaAG-GCgUGaaGCUGCUa-GUCG- -5'
11092 5' -53.4 NC_002794.1 + 186314 0.66 0.983585
Target:  5'- cCGCGG---CGCGCUcguccuccaacacgaUCGACGG-CGGCg -3'
miRNA:   3'- -GCGCCaagGCGUGA---------------AGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 107537 0.66 0.984671
Target:  5'- gCGCGGcgCCG-GCggCGACGAccgCGGUg -3'
miRNA:   3'- -GCGCCaaGGCgUGaaGCUGCUa--GUCG- -5'
11092 5' -53.4 NC_002794.1 + 135742 0.66 0.984671
Target:  5'- uGCcGcgCCGCGCccUCGAgGAUCAGg -3'
miRNA:   3'- gCGcCaaGGCGUGa-AGCUgCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 20035 0.66 0.984671
Target:  5'- gCGCGGUccggaUCGCGC-UCGACcaGAUCGcGCu -3'
miRNA:   3'- -GCGCCAa----GGCGUGaAGCUG--CUAGU-CG- -5'
11092 5' -53.4 NC_002794.1 + 189215 0.66 0.984846
Target:  5'- aGuCGG-UCCGCACcacccgcuccgucgUGACGAUCAGa -3'
miRNA:   3'- gC-GCCaAGGCGUGaa------------GCUGCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 37206 0.66 0.986357
Target:  5'- aCGuCGGgcagcCCGCACUgcgaccggaccUCGcCGAUCAGg -3'
miRNA:   3'- -GC-GCCaa---GGCGUGA-----------AGCuGCUAGUCg -5'
11092 5' -53.4 NC_002794.1 + 95760 0.66 0.986357
Target:  5'- uCGCGGggCgGCgGCcgCGACGG-CGGCc -3'
miRNA:   3'- -GCGCCaaGgCG-UGaaGCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 91281 0.66 0.986357
Target:  5'- gCGCGGc-CUGUACgugUCGGCGcUgAGCg -3'
miRNA:   3'- -GCGCCaaGGCGUGa--AGCUGCuAgUCG- -5'
11092 5' -53.4 NC_002794.1 + 110249 0.66 0.986357
Target:  5'- gGCGGagguuucCCGCGCggcgucgCGACGG-CGGCc -3'
miRNA:   3'- gCGCCaa-----GGCGUGaa-----GCUGCUaGUCG- -5'
11092 5' -53.4 NC_002794.1 + 49018 0.66 0.986357
Target:  5'- cCGCGGcggCCGCGgCgucgucCGGCGcggucGUCAGCg -3'
miRNA:   3'- -GCGCCaa-GGCGU-Gaa----GCUGC-----UAGUCG- -5'
11092 5' -53.4 NC_002794.1 + 137328 0.66 0.986357
Target:  5'- cCGCGGaaggUUCCGCG----GACGGcUCGGCg -3'
miRNA:   3'- -GCGCC----AAGGCGUgaagCUGCU-AGUCG- -5'
11092 5' -53.4 NC_002794.1 + 58545 0.66 0.986357
Target:  5'- cCGCGGcgCgCGCGCUgcuGGCGcgCuGCg -3'
miRNA:   3'- -GCGCCaaG-GCGUGAag-CUGCuaGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.