miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 950 0.66 0.565441
Target:  5'- cGCGCguccuuuUCGGGCUUCCCGCCucaguuucgcuuUCGGg -3'
miRNA:   3'- -CGCG-------AGCCCGGGGGGCGGccu---------AGCCa -5'
11093 3' -66.3 NC_002794.1 + 82660 0.66 0.553529
Target:  5'- cGCGCUCGacGCCgCgCCGgCGGAUCGc- -3'
miRNA:   3'- -CGCGAGCc-CGGgG-GGCgGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 117369 0.66 0.544417
Target:  5'- aGCGg-CGGGCCgCCUGCaCGGucgCGGc -3'
miRNA:   3'- -CGCgaGCCCGGgGGGCG-GCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 115928 0.66 0.544417
Target:  5'- gGCGCggcggCGGGCCggCCCGCCGcGugucgcCGGg -3'
miRNA:   3'- -CGCGa----GCCCGGg-GGGCGGC-Cua----GCCa -5'
11093 3' -66.3 NC_002794.1 + 49108 0.66 0.544417
Target:  5'- gGCGCUCGGcGUCCugcaccgggaCCgGCCGGAggUCGu- -3'
miRNA:   3'- -CGCGAGCC-CGGG----------GGgCGGCCU--AGCca -5'
11093 3' -66.3 NC_002794.1 + 130640 0.66 0.544417
Target:  5'- uCGC-CGGcccgcccgccGCCCCgCCGCCGGccgCGGg -3'
miRNA:   3'- cGCGaGCC----------CGGGG-GGCGGCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 15168 0.66 0.535354
Target:  5'- cCGCaggaGGGCCgUUCGCCGGAgacCGGg -3'
miRNA:   3'- cGCGag--CCCGGgGGGCGGCCUa--GCCa -5'
11093 3' -66.3 NC_002794.1 + 142838 0.66 0.53445
Target:  5'- cGCGUUCagguucaGGGCCuCCCCGCUGagcGAcagcuUCGGg -3'
miRNA:   3'- -CGCGAG-------CCCGG-GGGGCGGC---CU-----AGCCa -5'
11093 3' -66.3 NC_002794.1 + 152349 0.66 0.526345
Target:  5'- cGCGCUCuacGGCCgCuuGgaaCGGAUCGGc -3'
miRNA:   3'- -CGCGAGc--CCGGgGggCg--GCCUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 191187 0.66 0.526345
Target:  5'- cGCGCUCGcccGGCCgCCCGCCcGcUCGc- -3'
miRNA:   3'- -CGCGAGC---CCGGgGGGCGGcCuAGCca -5'
11093 3' -66.3 NC_002794.1 + 189890 0.66 0.526345
Target:  5'- cCGCUCGGGCCCgCCGUCaGcgCc-- -3'
miRNA:   3'- cGCGAGCCCGGGgGGCGGcCuaGcca -5'
11093 3' -66.3 NC_002794.1 + 62783 0.66 0.526345
Target:  5'- cGCGCgccgccucCGGGCCCCUaccucuccggcaCGCCGGcgCcGUa -3'
miRNA:   3'- -CGCGa-------GCCCGGGGG------------GCGGCCuaGcCA- -5'
11093 3' -66.3 NC_002794.1 + 46980 0.66 0.526345
Target:  5'- cGUGUUCcucGUCCCCCGCCGGcaCGGc -3'
miRNA:   3'- -CGCGAGcc-CGGGGGGCGGCCuaGCCa -5'
11093 3' -66.3 NC_002794.1 + 89712 0.66 0.526345
Target:  5'- gGCGCcgCGGuGCCgaUCCGCgCGGcGUCGGUc -3'
miRNA:   3'- -CGCGa-GCC-CGGg-GGGCG-GCC-UAGCCA- -5'
11093 3' -66.3 NC_002794.1 + 19806 0.66 0.517393
Target:  5'- cCGCUCGGaCCgCgCGCCGGAcUGGa -3'
miRNA:   3'- cGCGAGCCcGGgGgGCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 101003 0.66 0.517393
Target:  5'- aGCuGCcgCGGGCCuUCCUGUCGGGggacgCGGg -3'
miRNA:   3'- -CG-CGa-GCCCGG-GGGGCGGCCUa----GCCa -5'
11093 3' -66.3 NC_002794.1 + 122504 0.66 0.517393
Target:  5'- gGCGCcgcaggaGGGCuuCUCCgGCCGGAUCGa- -3'
miRNA:   3'- -CGCGag-----CCCG--GGGGgCGGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 146691 0.66 0.508503
Target:  5'- gGCGCUCGaGGCCgaCUGCgGGAgcuGGUg -3'
miRNA:   3'- -CGCGAGC-CCGGggGGCGgCCUag-CCA- -5'
11093 3' -66.3 NC_002794.1 + 183287 0.67 0.499678
Target:  5'- cGCGCggaUCGGGCCCggCGuCUGGAaCGGg -3'
miRNA:   3'- -CGCG---AGCCCGGGggGC-GGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 86299 0.67 0.499678
Target:  5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3'
miRNA:   3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.