miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 56584 0.67 0.465095
Target:  5'- cGCGCcgCGGcGCCCgCCGCCGGccuccucaUGGa -3'
miRNA:   3'- -CGCGa-GCC-CGGGgGGCGGCCua------GCCa -5'
11093 3' -66.3 NC_002794.1 + 175502 0.67 0.456644
Target:  5'- -gGUauUCGGGCCUUCCGCCcugaaaugcGAUCGGUu -3'
miRNA:   3'- cgCG--AGCCCGGGGGGCGGc--------CUAGCCA- -5'
11093 3' -66.3 NC_002794.1 + 101251 0.67 0.465095
Target:  5'- gGCGCgcagCGGggggccGCCCCCggCGCCGGuggCGGc -3'
miRNA:   3'- -CGCGa---GCC------CGGGGG--GCGGCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 22883 0.67 0.490921
Target:  5'- cGCGCUUcccuGGCCUCCCGuuGGuggaCGGc -3'
miRNA:   3'- -CGCGAGc---CCGGGGGGCggCCua--GCCa -5'
11093 3' -66.3 NC_002794.1 + 86107 0.67 0.499678
Target:  5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3'
miRNA:   3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 18034 0.67 0.490921
Target:  5'- aCGUgaCGGccGCCaCCCCGCCGGAUCu-- -3'
miRNA:   3'- cGCGa-GCC--CGG-GGGGCGGCCUAGcca -5'
11093 3' -66.3 NC_002794.1 + 86299 0.67 0.499678
Target:  5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3'
miRNA:   3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 183287 0.67 0.499678
Target:  5'- cGCGCggaUCGGGCCCggCGuCUGGAaCGGg -3'
miRNA:   3'- -CGCG---AGCCCGGGggGC-GGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 129231 0.67 0.499678
Target:  5'- gGCGCgaaCGGGCggCUCCGgCGGAcUCGGg -3'
miRNA:   3'- -CGCGa--GCCCGg-GGGGCgGCCU-AGCCa -5'
11093 3' -66.3 NC_002794.1 + 143129 0.68 0.423694
Target:  5'- gGCGCaggucUCGGGCCacuCCCCGC-GGAaguacgCGGUg -3'
miRNA:   3'- -CGCG-----AGCCCGG---GGGGCGgCCUa-----GCCA- -5'
11093 3' -66.3 NC_002794.1 + 183159 0.68 0.415681
Target:  5'- aCGCggcCGGGCUgCCCgaGCCGG-UCGGg -3'
miRNA:   3'- cGCGa--GCCCGGgGGG--CGGCCuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 114747 0.68 0.423694
Target:  5'- -aGC-CGGcGCCgCCCGCCGGcgcCGGUc -3'
miRNA:   3'- cgCGaGCC-CGGgGGGCGGCCua-GCCA- -5'
11093 3' -66.3 NC_002794.1 + 90370 0.68 0.423694
Target:  5'- uGCGCgugcagggcCGGGUCUCgCCGuCCGcGAUCGGg -3'
miRNA:   3'- -CGCGa--------GCCCGGGG-GGC-GGC-CUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 52763 0.68 0.423694
Target:  5'- cGCGC-CGcGGCCCgggCCGCgGGAUCGuGa -3'
miRNA:   3'- -CGCGaGC-CCGGGg--GGCGgCCUAGC-Ca -5'
11093 3' -66.3 NC_002794.1 + 183664 0.68 0.423694
Target:  5'- cGCGC-CGGGCCCgagcgCCGaCGGGUCGa- -3'
miRNA:   3'- -CGCGaGCCCGGGg----GGCgGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 113305 0.68 0.431799
Target:  5'- aGCGCUCGuccGCUaCCCGCCGGGccgUCaGGUa -3'
miRNA:   3'- -CGCGAGCc--CGGgGGGCGGCCU---AG-CCA- -5'
11093 3' -66.3 NC_002794.1 + 111053 0.68 0.435066
Target:  5'- uGCaGCUCGGucacuugccagacgcGCuCCCCCGUCGGcaggGUCGGc -3'
miRNA:   3'- -CG-CGAGCC---------------CG-GGGGGCGGCC----UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 71785 0.68 0.439993
Target:  5'- cGCGCggCGagucGCCCCCCGgCGGGcgCGGc -3'
miRNA:   3'- -CGCGa-GCc---CGGGGGGCgGCCUa-GCCa -5'
11093 3' -66.3 NC_002794.1 + 78920 0.68 0.448276
Target:  5'- cCGUcccgUCGGGCaCCCgCCGCCGGca-GGUc -3'
miRNA:   3'- cGCG----AGCCCG-GGG-GGCGGCCuagCCA- -5'
11093 3' -66.3 NC_002794.1 + 131532 0.68 0.423694
Target:  5'- gGCGC-CGGGCCcgucaucacggCCUCGCCcGuGGUCGGc -3'
miRNA:   3'- -CGCGaGCCCGG-----------GGGGCGG-C-CUAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.