miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 134905 0.74 0.185245
Target:  5'- cGCGCUCGGGUgaaacuuuUCgCCGCCGGG-CGGa -3'
miRNA:   3'- -CGCGAGCCCG--------GGgGGCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 184505 0.74 0.193888
Target:  5'- cGgGCggcgCGGGCCCCgCGCgCGGcgCGGg -3'
miRNA:   3'- -CgCGa---GCCCGGGGgGCG-GCCuaGCCa -5'
11093 3' -66.3 NC_002794.1 + 194665 0.73 0.207514
Target:  5'- uGCGC-CGGGUCCCCCuCCGGGUgCGa- -3'
miRNA:   3'- -CGCGaGCCCGGGGGGcGGCCUA-GCca -5'
11093 3' -66.3 NC_002794.1 + 107036 0.73 0.207514
Target:  5'- cCGCUgGGGaCCCCCgCGUCGGAggcggCGGg -3'
miRNA:   3'- cGCGAgCCC-GGGGG-GCGGCCUa----GCCa -5'
11093 3' -66.3 NC_002794.1 + 85011 0.73 0.198341
Target:  5'- cGCGCUCGGGUgCCCCGggcccacgcUCGGGugccUCGGg -3'
miRNA:   3'- -CGCGAGCCCGgGGGGC---------GGCCU----AGCCa -5'
11093 3' -66.3 NC_002794.1 + 50817 0.73 0.217051
Target:  5'- gGCGCUCcGGCgCCCCCGCCc--UCGGg -3'
miRNA:   3'- -CGCGAGcCCG-GGGGGCGGccuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 145334 0.73 0.21176
Target:  5'- gGCGCUCGGGCCCgagcgggCCCgaGCUGGGggugUGGUc -3'
miRNA:   3'- -CGCGAGCCCGGG-------GGG--CGGCCUa---GCCA- -5'
11093 3' -66.3 NC_002794.1 + 19341 0.71 0.264115
Target:  5'- cGCGC-CGGucacccccucgccGCCcgCCCCGcCCGGAUCGGg -3'
miRNA:   3'- -CGCGaGCC-------------CGG--GGGGC-GGCCUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 68841 0.71 0.264688
Target:  5'- gGCGCUCGcGGUCCCCgaCGaccCCGGAgcUCGGg -3'
miRNA:   3'- -CGCGAGC-CCGGGGG--GC---GGCCU--AGCCa -5'
11093 3' -66.3 NC_002794.1 + 19519 0.71 0.276364
Target:  5'- cCGCUCGGaGCgCCggcgcggcgcggCCCGCCGGuGUCGGa -3'
miRNA:   3'- cGCGAGCC-CG-GG------------GGGCGGCC-UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 66833 0.71 0.288447
Target:  5'- gGCGCgacucCGGGCgCCgCCGUCGGcgCGGc -3'
miRNA:   3'- -CGCGa----GCCCGgGG-GGCGGCCuaGCCa -5'
11093 3' -66.3 NC_002794.1 + 146907 0.71 0.294642
Target:  5'- gGCGCUCGGGCgCggggaUCgGCCGGA-CGGa -3'
miRNA:   3'- -CGCGAGCCCGgG-----GGgCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 17445 0.7 0.320459
Target:  5'- gGCGCUCGGGCCCg-CGaCCGaGGUCGa- -3'
miRNA:   3'- -CGCGAGCCCGGGggGC-GGC-CUAGCca -5'
11093 3' -66.3 NC_002794.1 + 144903 0.7 0.336055
Target:  5'- cGCGCcgcUGGGCCCCgCCGCCGGcaccaaccgcgccaaGGUg -3'
miRNA:   3'- -CGCGa--GCCCGGGG-GGCGGCCuag------------CCA- -5'
11093 3' -66.3 NC_002794.1 + 145536 0.7 0.320459
Target:  5'- aGCGcCUCGGGCgCCCCGagcggcccgaCCGGuucgCGGa -3'
miRNA:   3'- -CGC-GAGCCCGgGGGGC----------GGCCua--GCCa -5'
11093 3' -66.3 NC_002794.1 + 145773 0.7 0.34091
Target:  5'- aGCGCcacgCGGagucGUCCCCgGCCGGcUCGGa -3'
miRNA:   3'- -CGCGa---GCC----CGGGGGgCGGCCuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 135496 0.7 0.338823
Target:  5'- cGCGCgCGGGCCCgaugCCCGCacacCGGAcgcucgcgcgccgcUCGGUc -3'
miRNA:   3'- -CGCGaGCCCGGG----GGGCG----GCCU--------------AGCCA- -5'
11093 3' -66.3 NC_002794.1 + 106235 0.7 0.320459
Target:  5'- cGCGCUCGGGUCgCagaCCGCCGcGAacCGGc -3'
miRNA:   3'- -CGCGAGCCCGG-Gg--GGCGGC-CUa-GCCa -5'
11093 3' -66.3 NC_002794.1 + 178823 0.7 0.333989
Target:  5'- gGCaCUCGGGUCUCCCGCgGGucUCGcGUg -3'
miRNA:   3'- -CGcGAGCCCGGGGGGCGgCCu-AGC-CA- -5'
11093 3' -66.3 NC_002794.1 + 67056 0.69 0.354342
Target:  5'- gGCGUccgUGGGCUCCUCGCUGGccuugauguacguGUCGGg -3'
miRNA:   3'- -CGCGa--GCCCGGGGGGCGGCC-------------UAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.