miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 80422 0.69 0.354342
Target:  5'- gGCGCcgggCGGGgCCgCCGCCGGcggccgccggcccGUCGGc -3'
miRNA:   3'- -CGCGa---GCCCgGGgGGCGGCC-------------UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 187561 0.69 0.362288
Target:  5'- cCGCcgUCGGGCCCguaCCCGCCG--UCGGc -3'
miRNA:   3'- cGCG--AGCCCGGG---GGGCGGCcuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 191520 0.69 0.362288
Target:  5'- aGCGC-CGGGCgucggcccgcgcCUCCCGCCGcaGUCGGg -3'
miRNA:   3'- -CGCGaGCCCG------------GGGGGCGGCc-UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 137650 0.69 0.377049
Target:  5'- gGCGC-CGGGCCUCCggCGCCGcuGGUgCGGa -3'
miRNA:   3'- -CGCGaGCCCGGGGG--GCGGC--CUA-GCCa -5'
11093 3' -66.3 NC_002794.1 + 86155 0.69 0.377049
Target:  5'- aUGCUcCGGGCCaCgCCCGaCCGGAUgcccCGGg -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 105667 0.69 0.377049
Target:  5'- cGCGCUCc-GCCCggaCCGCCGGGaacgUCGGa -3'
miRNA:   3'- -CGCGAGccCGGGg--GGCGGCCU----AGCCa -5'
11093 3' -66.3 NC_002794.1 + 86347 0.69 0.377049
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUgcccCGGg -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86515 0.69 0.377049
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUgcccCGGg -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86833 0.69 0.38458
Target:  5'- uCGCcgggaUCGGGUCggcggCCCCGCCGgGAUUGGg -3'
miRNA:   3'- cGCG-----AGCCCGG-----GGGGCGGC-CUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 149684 0.69 0.38458
Target:  5'- cGCGCUCgacuggccgcggGGGCCgCCUGgCGGGUgGGc -3'
miRNA:   3'- -CGCGAG------------CCCGGgGGGCgGCCUAgCCa -5'
11093 3' -66.3 NC_002794.1 + 150074 0.69 0.38458
Target:  5'- cGCGCUCuGGCCUUCCugcGCUGGG-CGGa -3'
miRNA:   3'- -CGCGAGcCCGGGGGG---CGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 86203 0.69 0.39221
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUguucCGGa -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86563 0.69 0.39221
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUuuucCGGa -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86395 0.69 0.39221
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUguucCGGa -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 153845 0.68 0.399938
Target:  5'- uGCGCgCGuuGCCCCCCGCCGuGccggCGGa -3'
miRNA:   3'- -CGCGaGCc-CGGGGGGCGGC-Cua--GCCa -5'
11093 3' -66.3 NC_002794.1 + 21688 0.68 0.407762
Target:  5'- cCGCUCcGGCUCCCCGCC---UCGGc -3'
miRNA:   3'- cGCGAGcCCGGGGGGCGGccuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 183458 0.68 0.407762
Target:  5'- cCGC-CGGcGCCCgCCCGCCGcGAguccgCGGc -3'
miRNA:   3'- cGCGaGCC-CGGG-GGGCGGC-CUa----GCCa -5'
11093 3' -66.3 NC_002794.1 + 41663 0.68 0.410918
Target:  5'- cGUGUccuuaUCGGGCCgCCgcaggagcgcccggaCCGCCGGAUCGu- -3'
miRNA:   3'- -CGCG-----AGCCCGG-GG---------------GGCGGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 183159 0.68 0.415681
Target:  5'- aCGCggcCGGGCUgCCCgaGCCGG-UCGGg -3'
miRNA:   3'- cGCGa--GCCCGGgGGG--CGGCCuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 90370 0.68 0.423694
Target:  5'- uGCGCgugcagggcCGGGUCUCgCCGuCCGcGAUCGGg -3'
miRNA:   3'- -CGCGa--------GCCCGGGG-GGC-GGC-CUAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.