Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11093 | 3' | -66.3 | NC_002794.1 | + | 52763 | 0.68 | 0.423694 |
Target: 5'- cGCGC-CGcGGCCCgggCCGCgGGAUCGuGa -3' miRNA: 3'- -CGCGaGC-CCGGGg--GGCGgCCUAGC-Ca -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 143129 | 0.68 | 0.423694 |
Target: 5'- gGCGCaggucUCGGGCCacuCCCCGC-GGAaguacgCGGUg -3' miRNA: 3'- -CGCG-----AGCCCGG---GGGGCGgCCUa-----GCCA- -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 131532 | 0.68 | 0.423694 |
Target: 5'- gGCGC-CGGGCCcgucaucacggCCUCGCCcGuGGUCGGc -3' miRNA: 3'- -CGCGaGCCCGG-----------GGGGCGG-C-CUAGCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 90370 | 0.68 | 0.423694 |
Target: 5'- uGCGCgugcagggcCGGGUCUCgCCGuCCGcGAUCGGg -3' miRNA: 3'- -CGCGa--------GCCCGGGG-GGC-GGC-CUAGCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 114747 | 0.68 | 0.423694 |
Target: 5'- -aGC-CGGcGCCgCCCGCCGGcgcCGGUc -3' miRNA: 3'- cgCGaGCC-CGGgGGGCGGCCua-GCCA- -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 113305 | 0.68 | 0.431799 |
Target: 5'- aGCGCUCGuccGCUaCCCGCCGGGccgUCaGGUa -3' miRNA: 3'- -CGCGAGCc--CGGgGGGCGGCCU---AG-CCA- -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 111053 | 0.68 | 0.435066 |
Target: 5'- uGCaGCUCGGucacuugccagacgcGCuCCCCCGUCGGcaggGUCGGc -3' miRNA: 3'- -CG-CGAGCC---------------CG-GGGGGCGGCC----UAGCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 71785 | 0.68 | 0.439993 |
Target: 5'- cGCGCggCGagucGCCCCCCGgCGGGcgCGGc -3' miRNA: 3'- -CGCGa-GCc---CGGGGGGCgGCCUa-GCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 111649 | 0.68 | 0.439993 |
Target: 5'- gGCGCcgcggcCGcGGCCaCgCCCGUCGGAUaCGGUc -3' miRNA: 3'- -CGCGa-----GC-CCGG-G-GGGCGGCCUA-GCCA- -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 78920 | 0.68 | 0.448276 |
Target: 5'- cCGUcccgUCGGGCaCCCgCCGCCGGca-GGUc -3' miRNA: 3'- cGCG----AGCCCG-GGG-GGCGGCCuagCCA- -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 127055 | 0.67 | 0.454124 |
Target: 5'- uCGaCUCGGGCUaugucuguggagagCgCCCGCCGGAcCGGc -3' miRNA: 3'- cGC-GAGCCCGG--------------G-GGGCGGCCUaGCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 175502 | 0.67 | 0.456644 |
Target: 5'- -gGUauUCGGGCCUUCCGCCcugaaaugcGAUCGGUu -3' miRNA: 3'- cgCG--AGCCCGGGGGGCGGc--------CUAGCCA- -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 56373 | 0.67 | 0.456644 |
Target: 5'- cGUGCUCGGGaUCCaCCgGCaCGGAUUGcGa -3' miRNA: 3'- -CGCGAGCCC-GGG-GGgCG-GCCUAGC-Ca -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 101251 | 0.67 | 0.465095 |
Target: 5'- gGCGCgcagCGGggggccGCCCCCggCGCCGGuggCGGc -3' miRNA: 3'- -CGCGa---GCC------CGGGGG--GCGGCCua-GCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 56584 | 0.67 | 0.465095 |
Target: 5'- cGCGCcgCGGcGCCCgCCGCCGGccuccucaUGGa -3' miRNA: 3'- -CGCGa-GCC-CGGGgGGCGGCCua------GCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 18034 | 0.67 | 0.490921 |
Target: 5'- aCGUgaCGGccGCCaCCCCGCCGGAUCu-- -3' miRNA: 3'- cGCGa-GCC--CGG-GGGGCGGCCUAGcca -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 22883 | 0.67 | 0.490921 |
Target: 5'- cGCGCUUcccuGGCCUCCCGuuGGuggaCGGc -3' miRNA: 3'- -CGCGAGc---CCGGGGGGCggCCua--GCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 86107 | 0.67 | 0.499678 |
Target: 5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3' miRNA: 3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 86299 | 0.67 | 0.499678 |
Target: 5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3' miRNA: 3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5' |
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11093 | 3' | -66.3 | NC_002794.1 | + | 183287 | 0.67 | 0.499678 |
Target: 5'- cGCGCggaUCGGGCCCggCGuCUGGAaCGGg -3' miRNA: 3'- -CGCG---AGCCCGGGggGC-GGCCUaGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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