miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 950 0.66 0.565441
Target:  5'- cGCGCguccuuuUCGGGCUUCCCGCCucaguuucgcuuUCGGg -3'
miRNA:   3'- -CGCG-------AGCCCGGGGGGCGGccu---------AGCCa -5'
11093 3' -66.3 NC_002794.1 + 15168 0.66 0.535354
Target:  5'- cCGCaggaGGGCCgUUCGCCGGAgacCGGg -3'
miRNA:   3'- cGCGag--CCCGGgGGGCGGCCUa--GCCa -5'
11093 3' -66.3 NC_002794.1 + 17445 0.7 0.320459
Target:  5'- gGCGCUCGGGCCCg-CGaCCGaGGUCGa- -3'
miRNA:   3'- -CGCGAGCCCGGGggGC-GGC-CUAGCca -5'
11093 3' -66.3 NC_002794.1 + 18034 0.67 0.490921
Target:  5'- aCGUgaCGGccGCCaCCCCGCCGGAUCu-- -3'
miRNA:   3'- cGCGa-GCC--CGG-GGGGCGGCCUAGcca -5'
11093 3' -66.3 NC_002794.1 + 19341 0.71 0.264115
Target:  5'- cGCGC-CGGucacccccucgccGCCcgCCCCGcCCGGAUCGGg -3'
miRNA:   3'- -CGCGaGCC-------------CGG--GGGGC-GGCCUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 19519 0.71 0.276364
Target:  5'- cCGCUCGGaGCgCCggcgcggcgcggCCCGCCGGuGUCGGa -3'
miRNA:   3'- cGCGAGCC-CG-GG------------GGGCGGCC-UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 19806 0.66 0.517393
Target:  5'- cCGCUCGGaCCgCgCGCCGGAcUGGa -3'
miRNA:   3'- cGCGAGCCcGGgGgGCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 21688 0.68 0.407762
Target:  5'- cCGCUCcGGCUCCCCGCC---UCGGc -3'
miRNA:   3'- cGCGAGcCCGGGGGGCGGccuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 22883 0.67 0.490921
Target:  5'- cGCGCUUcccuGGCCUCCCGuuGGuggaCGGc -3'
miRNA:   3'- -CGCGAGc---CCGGGGGGCggCCua--GCCa -5'
11093 3' -66.3 NC_002794.1 + 41663 0.68 0.410918
Target:  5'- cGUGUccuuaUCGGGCCgCCgcaggagcgcccggaCCGCCGGAUCGu- -3'
miRNA:   3'- -CGCG-----AGCCCGG-GG---------------GGCGGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 46980 0.66 0.526345
Target:  5'- cGUGUUCcucGUCCCCCGCCGGcaCGGc -3'
miRNA:   3'- -CGCGAGcc-CGGGGGGCGGCCuaGCCa -5'
11093 3' -66.3 NC_002794.1 + 49108 0.66 0.544417
Target:  5'- gGCGCUCGGcGUCCugcaccgggaCCgGCCGGAggUCGu- -3'
miRNA:   3'- -CGCGAGCC-CGGG----------GGgCGGCCU--AGCca -5'
11093 3' -66.3 NC_002794.1 + 50817 0.73 0.217051
Target:  5'- gGCGCUCcGGCgCCCCCGCCc--UCGGg -3'
miRNA:   3'- -CGCGAGcCCG-GGGGGCGGccuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 52763 0.68 0.423694
Target:  5'- cGCGC-CGcGGCCCgggCCGCgGGAUCGuGa -3'
miRNA:   3'- -CGCGaGC-CCGGGg--GGCGgCCUAGC-Ca -5'
11093 3' -66.3 NC_002794.1 + 56373 0.67 0.456644
Target:  5'- cGUGCUCGGGaUCCaCCgGCaCGGAUUGcGa -3'
miRNA:   3'- -CGCGAGCCC-GGG-GGgCG-GCCUAGC-Ca -5'
11093 3' -66.3 NC_002794.1 + 56584 0.67 0.465095
Target:  5'- cGCGCcgCGGcGCCCgCCGCCGGccuccucaUGGa -3'
miRNA:   3'- -CGCGa-GCC-CGGGgGGCGGCCua------GCCa -5'
11093 3' -66.3 NC_002794.1 + 62783 0.66 0.526345
Target:  5'- cGCGCgccgccucCGGGCCCCUaccucuccggcaCGCCGGcgCcGUa -3'
miRNA:   3'- -CGCGa-------GCCCGGGGG------------GCGGCCuaGcCA- -5'
11093 3' -66.3 NC_002794.1 + 66833 0.71 0.288447
Target:  5'- gGCGCgacucCGGGCgCCgCCGUCGGcgCGGc -3'
miRNA:   3'- -CGCGa----GCCCGgGG-GGCGGCCuaGCCa -5'
11093 3' -66.3 NC_002794.1 + 67056 0.69 0.354342
Target:  5'- gGCGUccgUGGGCUCCUCGCUGGccuugauguacguGUCGGg -3'
miRNA:   3'- -CGCGa--GCCCGGGGGGCGGCC-------------UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 68841 0.71 0.264688
Target:  5'- gGCGCUCGcGGUCCCCgaCGaccCCGGAgcUCGGg -3'
miRNA:   3'- -CGCGAGC-CCGGGGG--GC---GGCCU--AGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.