miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 71785 0.68 0.439993
Target:  5'- cGCGCggCGagucGCCCCCCGgCGGGcgCGGc -3'
miRNA:   3'- -CGCGa-GCc---CGGGGGGCgGCCUa-GCCa -5'
11093 3' -66.3 NC_002794.1 + 78920 0.68 0.448276
Target:  5'- cCGUcccgUCGGGCaCCCgCCGCCGGca-GGUc -3'
miRNA:   3'- cGCG----AGCCCG-GGG-GGCGGCCuagCCA- -5'
11093 3' -66.3 NC_002794.1 + 80422 0.69 0.354342
Target:  5'- gGCGCcgggCGGGgCCgCCGCCGGcggccgccggcccGUCGGc -3'
miRNA:   3'- -CGCGa---GCCCgGGgGGCGGCC-------------UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 82660 0.66 0.553529
Target:  5'- cGCGCUCGacGCCgCgCCGgCGGAUCGc- -3'
miRNA:   3'- -CGCGAGCc-CGGgG-GGCgGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 85011 0.73 0.198341
Target:  5'- cGCGCUCGGGUgCCCCGggcccacgcUCGGGugccUCGGg -3'
miRNA:   3'- -CGCGAGCCCGgGGGGC---------GGCCU----AGCCa -5'
11093 3' -66.3 NC_002794.1 + 86107 0.67 0.499678
Target:  5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3'
miRNA:   3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86155 0.69 0.377049
Target:  5'- aUGCUcCGGGCCaCgCCCGaCCGGAUgcccCGGg -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86203 0.69 0.39221
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUguucCGGa -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86299 0.67 0.499678
Target:  5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3'
miRNA:   3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86347 0.69 0.377049
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUgcccCGGg -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86395 0.69 0.39221
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUguucCGGa -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86515 0.69 0.377049
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUgcccCGGg -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86563 0.69 0.39221
Target:  5'- aUGCUcCGGGCCgCgCCCGaCCGGAUuuucCGGa -3'
miRNA:   3'- cGCGA-GCCCGG-G-GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 86833 0.69 0.38458
Target:  5'- uCGCcgggaUCGGGUCggcggCCCCGCCGgGAUUGGg -3'
miRNA:   3'- cGCG-----AGCCCGG-----GGGGCGGC-CUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 89712 0.66 0.526345
Target:  5'- gGCGCcgCGGuGCCgaUCCGCgCGGcGUCGGUc -3'
miRNA:   3'- -CGCGa-GCC-CGGg-GGGCG-GCC-UAGCCA- -5'
11093 3' -66.3 NC_002794.1 + 90370 0.68 0.423694
Target:  5'- uGCGCgugcagggcCGGGUCUCgCCGuCCGcGAUCGGg -3'
miRNA:   3'- -CGCGa--------GCCCGGGG-GGC-GGC-CUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 101003 0.66 0.517393
Target:  5'- aGCuGCcgCGGGCCuUCCUGUCGGGggacgCGGg -3'
miRNA:   3'- -CG-CGa-GCCCGG-GGGGCGGCCUa----GCCa -5'
11093 3' -66.3 NC_002794.1 + 101251 0.67 0.465095
Target:  5'- gGCGCgcagCGGggggccGCCCCCggCGCCGGuggCGGc -3'
miRNA:   3'- -CGCGa---GCC------CGGGGG--GCGGCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 105667 0.69 0.377049
Target:  5'- cGCGCUCc-GCCCggaCCGCCGGGaacgUCGGa -3'
miRNA:   3'- -CGCGAGccCGGGg--GGCGGCCU----AGCCa -5'
11093 3' -66.3 NC_002794.1 + 106235 0.7 0.320459
Target:  5'- cGCGCUCGGGUCgCagaCCGCCGcGAacCGGc -3'
miRNA:   3'- -CGCGAGCCCGG-Gg--GGCGGC-CUa-GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.