miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 107036 0.73 0.207514
Target:  5'- cCGCUgGGGaCCCCCgCGUCGGAggcggCGGg -3'
miRNA:   3'- cGCGAgCCC-GGGGG-GCGGCCUa----GCCa -5'
11093 3' -66.3 NC_002794.1 + 111053 0.68 0.435066
Target:  5'- uGCaGCUCGGucacuugccagacgcGCuCCCCCGUCGGcaggGUCGGc -3'
miRNA:   3'- -CG-CGAGCC---------------CG-GGGGGCGGCC----UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 111649 0.68 0.439993
Target:  5'- gGCGCcgcggcCGcGGCCaCgCCCGUCGGAUaCGGUc -3'
miRNA:   3'- -CGCGa-----GC-CCGG-G-GGGCGGCCUA-GCCA- -5'
11093 3' -66.3 NC_002794.1 + 113305 0.68 0.431799
Target:  5'- aGCGCUCGuccGCUaCCCGCCGGGccgUCaGGUa -3'
miRNA:   3'- -CGCGAGCc--CGGgGGGCGGCCU---AG-CCA- -5'
11093 3' -66.3 NC_002794.1 + 114747 0.68 0.423694
Target:  5'- -aGC-CGGcGCCgCCCGCCGGcgcCGGUc -3'
miRNA:   3'- cgCGaGCC-CGGgGGGCGGCCua-GCCA- -5'
11093 3' -66.3 NC_002794.1 + 115928 0.66 0.544417
Target:  5'- gGCGCggcggCGGGCCggCCCGCCGcGugucgcCGGg -3'
miRNA:   3'- -CGCGa----GCCCGGg-GGGCGGC-Cua----GCCa -5'
11093 3' -66.3 NC_002794.1 + 117369 0.66 0.544417
Target:  5'- aGCGg-CGGGCCgCCUGCaCGGucgCGGc -3'
miRNA:   3'- -CGCgaGCCCGGgGGGCG-GCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 122504 0.66 0.517393
Target:  5'- gGCGCcgcaggaGGGCuuCUCCgGCCGGAUCGa- -3'
miRNA:   3'- -CGCGag-----CCCG--GGGGgCGGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 127055 0.67 0.454124
Target:  5'- uCGaCUCGGGCUaugucuguggagagCgCCCGCCGGAcCGGc -3'
miRNA:   3'- cGC-GAGCCCGG--------------G-GGGCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 129231 0.67 0.499678
Target:  5'- gGCGCgaaCGGGCggCUCCGgCGGAcUCGGg -3'
miRNA:   3'- -CGCGa--GCCCGg-GGGGCgGCCU-AGCCa -5'
11093 3' -66.3 NC_002794.1 + 130640 0.66 0.544417
Target:  5'- uCGC-CGGcccgcccgccGCCCCgCCGCCGGccgCGGg -3'
miRNA:   3'- cGCGaGCC----------CGGGG-GGCGGCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 131532 0.68 0.423694
Target:  5'- gGCGC-CGGGCCcgucaucacggCCUCGCCcGuGGUCGGc -3'
miRNA:   3'- -CGCGaGCCCGG-----------GGGGCGG-C-CUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 134905 0.74 0.185245
Target:  5'- cGCGCUCGGGUgaaacuuuUCgCCGCCGGG-CGGa -3'
miRNA:   3'- -CGCGAGCCCG--------GGgGGCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 135496 0.7 0.338823
Target:  5'- cGCGCgCGGGCCCgaugCCCGCacacCGGAcgcucgcgcgccgcUCGGUc -3'
miRNA:   3'- -CGCGaGCCCGGG----GGGCG----GCCU--------------AGCCA- -5'
11093 3' -66.3 NC_002794.1 + 137650 0.69 0.377049
Target:  5'- gGCGC-CGGGCCUCCggCGCCGcuGGUgCGGa -3'
miRNA:   3'- -CGCGaGCCCGGGGG--GCGGC--CUA-GCCa -5'
11093 3' -66.3 NC_002794.1 + 142838 0.66 0.53445
Target:  5'- cGCGUUCagguucaGGGCCuCCCCGCUGagcGAcagcuUCGGg -3'
miRNA:   3'- -CGCGAG-------CCCGG-GGGGCGGC---CU-----AGCCa -5'
11093 3' -66.3 NC_002794.1 + 143129 0.68 0.423694
Target:  5'- gGCGCaggucUCGGGCCacuCCCCGC-GGAaguacgCGGUg -3'
miRNA:   3'- -CGCG-----AGCCCGG---GGGGCGgCCUa-----GCCA- -5'
11093 3' -66.3 NC_002794.1 + 144903 0.7 0.336055
Target:  5'- cGCGCcgcUGGGCCCCgCCGCCGGcaccaaccgcgccaaGGUg -3'
miRNA:   3'- -CGCGa--GCCCGGGG-GGCGGCCuag------------CCA- -5'
11093 3' -66.3 NC_002794.1 + 145334 0.73 0.21176
Target:  5'- gGCGCUCGGGCCCgagcgggCCCgaGCUGGGggugUGGUc -3'
miRNA:   3'- -CGCGAGCCCGGG-------GGG--CGGCCUa---GCCA- -5'
11093 3' -66.3 NC_002794.1 + 145536 0.7 0.320459
Target:  5'- aGCGcCUCGGGCgCCCCGagcggcccgaCCGGuucgCGGa -3'
miRNA:   3'- -CGC-GAGCCCGgGGGGC----------GGCCua--GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.