miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 194665 0.73 0.207514
Target:  5'- uGCGC-CGGGUCCCCCuCCGGGUgCGa- -3'
miRNA:   3'- -CGCGaGCCCGGGGGGcGGCCUA-GCca -5'
11093 3' -66.3 NC_002794.1 + 191520 0.69 0.362288
Target:  5'- aGCGC-CGGGCgucggcccgcgcCUCCCGCCGcaGUCGGg -3'
miRNA:   3'- -CGCGaGCCCG------------GGGGGCGGCc-UAGCCa -5'
11093 3' -66.3 NC_002794.1 + 191187 0.66 0.526345
Target:  5'- cGCGCUCGcccGGCCgCCCGCCcGcUCGc- -3'
miRNA:   3'- -CGCGAGC---CCGGgGGGCGGcCuAGCca -5'
11093 3' -66.3 NC_002794.1 + 189890 0.66 0.526345
Target:  5'- cCGCUCGGGCCCgCCGUCaGcgCc-- -3'
miRNA:   3'- cGCGAGCCCGGGgGGCGGcCuaGcca -5'
11093 3' -66.3 NC_002794.1 + 187561 0.69 0.362288
Target:  5'- cCGCcgUCGGGCCCguaCCCGCCG--UCGGc -3'
miRNA:   3'- cGCG--AGCCCGGG---GGGCGGCcuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 184505 0.74 0.193888
Target:  5'- cGgGCggcgCGGGCCCCgCGCgCGGcgCGGg -3'
miRNA:   3'- -CgCGa---GCCCGGGGgGCG-GCCuaGCCa -5'
11093 3' -66.3 NC_002794.1 + 183664 0.68 0.423694
Target:  5'- cGCGC-CGGGCCCgagcgCCGaCGGGUCGa- -3'
miRNA:   3'- -CGCGaGCCCGGGg----GGCgGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 183458 0.68 0.407762
Target:  5'- cCGC-CGGcGCCCgCCCGCCGcGAguccgCGGc -3'
miRNA:   3'- cGCGaGCC-CGGG-GGGCGGC-CUa----GCCa -5'
11093 3' -66.3 NC_002794.1 + 183287 0.67 0.499678
Target:  5'- cGCGCggaUCGGGCCCggCGuCUGGAaCGGg -3'
miRNA:   3'- -CGCG---AGCCCGGGggGC-GGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 183159 0.68 0.415681
Target:  5'- aCGCggcCGGGCUgCCCgaGCCGG-UCGGg -3'
miRNA:   3'- cGCGa--GCCCGGgGGG--CGGCCuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 178823 0.7 0.333989
Target:  5'- gGCaCUCGGGUCUCCCGCgGGucUCGcGUg -3'
miRNA:   3'- -CGcGAGCCCGGGGGGCGgCCu-AGC-CA- -5'
11093 3' -66.3 NC_002794.1 + 175502 0.67 0.456644
Target:  5'- -gGUauUCGGGCCUUCCGCCcugaaaugcGAUCGGUu -3'
miRNA:   3'- cgCG--AGCCCGGGGGGCGGc--------CUAGCCA- -5'
11093 3' -66.3 NC_002794.1 + 153845 0.68 0.399938
Target:  5'- uGCGCgCGuuGCCCCCCGCCGuGccggCGGa -3'
miRNA:   3'- -CGCGaGCc-CGGGGGGCGGC-Cua--GCCa -5'
11093 3' -66.3 NC_002794.1 + 152349 0.66 0.526345
Target:  5'- cGCGCUCuacGGCCgCuuGgaaCGGAUCGGc -3'
miRNA:   3'- -CGCGAGc--CCGGgGggCg--GCCUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 150074 0.69 0.38458
Target:  5'- cGCGCUCuGGCCUUCCugcGCUGGG-CGGa -3'
miRNA:   3'- -CGCGAGcCCGGGGGG---CGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 149684 0.69 0.38458
Target:  5'- cGCGCUCgacuggccgcggGGGCCgCCUGgCGGGUgGGc -3'
miRNA:   3'- -CGCGAG------------CCCGGgGGGCgGCCUAgCCa -5'
11093 3' -66.3 NC_002794.1 + 146907 0.71 0.294642
Target:  5'- gGCGCUCGGGCgCggggaUCgGCCGGA-CGGa -3'
miRNA:   3'- -CGCGAGCCCGgG-----GGgCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 146691 0.66 0.508503
Target:  5'- gGCGCUCGaGGCCgaCUGCgGGAgcuGGUg -3'
miRNA:   3'- -CGCGAGC-CCGGggGGCGgCCUag-CCA- -5'
11093 3' -66.3 NC_002794.1 + 145773 0.7 0.34091
Target:  5'- aGCGCcacgCGGagucGUCCCCgGCCGGcUCGGa -3'
miRNA:   3'- -CGCGa---GCC----CGGGGGgCGGCCuAGCCa -5'
11093 3' -66.3 NC_002794.1 + 145536 0.7 0.320459
Target:  5'- aGCGcCUCGGGCgCCCCGagcggcccgaCCGGuucgCGGa -3'
miRNA:   3'- -CGC-GAGCCCGgGGGGC----------GGCCua--GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.