miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 3' -66.3 NC_002794.1 + 117369 0.66 0.544417
Target:  5'- aGCGg-CGGGCCgCCUGCaCGGucgCGGc -3'
miRNA:   3'- -CGCgaGCCCGGgGGGCG-GCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 115928 0.66 0.544417
Target:  5'- gGCGCggcggCGGGCCggCCCGCCGcGugucgcCGGg -3'
miRNA:   3'- -CGCGa----GCCCGGg-GGGCGGC-Cua----GCCa -5'
11093 3' -66.3 NC_002794.1 + 49108 0.66 0.544417
Target:  5'- gGCGCUCGGcGUCCugcaccgggaCCgGCCGGAggUCGu- -3'
miRNA:   3'- -CGCGAGCC-CGGG----------GGgCGGCCU--AGCca -5'
11093 3' -66.3 NC_002794.1 + 130640 0.66 0.544417
Target:  5'- uCGC-CGGcccgcccgccGCCCCgCCGCCGGccgCGGg -3'
miRNA:   3'- cGCGaGCC----------CGGGG-GGCGGCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 82660 0.66 0.553529
Target:  5'- cGCGCUCGacGCCgCgCCGgCGGAUCGc- -3'
miRNA:   3'- -CGCGAGCc-CGGgG-GGCgGCCUAGCca -5'
11093 3' -66.3 NC_002794.1 + 152349 0.66 0.526345
Target:  5'- cGCGCUCuacGGCCgCuuGgaaCGGAUCGGc -3'
miRNA:   3'- -CGCGAGc--CCGGgGggCg--GCCUAGCCa -5'
11093 3' -66.3 NC_002794.1 + 101003 0.66 0.517393
Target:  5'- aGCuGCcgCGGGCCuUCCUGUCGGGggacgCGGg -3'
miRNA:   3'- -CG-CGa-GCCCGG-GGGGCGGCCUa----GCCa -5'
11093 3' -66.3 NC_002794.1 + 56373 0.67 0.456644
Target:  5'- cGUGCUCGGGaUCCaCCgGCaCGGAUUGcGa -3'
miRNA:   3'- -CGCGAGCCC-GGG-GGgCG-GCCUAGC-Ca -5'
11093 3' -66.3 NC_002794.1 + 127055 0.67 0.454124
Target:  5'- uCGaCUCGGGCUaugucuguggagagCgCCCGCCGGAcCGGc -3'
miRNA:   3'- cGC-GAGCCCGG--------------G-GGGCGGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 56584 0.67 0.465095
Target:  5'- cGCGCcgCGGcGCCCgCCGCCGGccuccucaUGGa -3'
miRNA:   3'- -CGCGa-GCC-CGGGgGGCGGCCua------GCCa -5'
11093 3' -66.3 NC_002794.1 + 175502 0.67 0.456644
Target:  5'- -gGUauUCGGGCCUUCCGCCcugaaaugcGAUCGGUu -3'
miRNA:   3'- cgCG--AGCCCGGGGGGCGGc--------CUAGCCA- -5'
11093 3' -66.3 NC_002794.1 + 101251 0.67 0.465095
Target:  5'- gGCGCgcagCGGggggccGCCCCCggCGCCGGuggCGGc -3'
miRNA:   3'- -CGCGa---GCC------CGGGGG--GCGGCCua-GCCa -5'
11093 3' -66.3 NC_002794.1 + 22883 0.67 0.490921
Target:  5'- cGCGCUUcccuGGCCUCCCGuuGGuggaCGGc -3'
miRNA:   3'- -CGCGAGc---CCGGGGGGCggCCua--GCCa -5'
11093 3' -66.3 NC_002794.1 + 86107 0.67 0.499678
Target:  5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3'
miRNA:   3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 18034 0.67 0.490921
Target:  5'- aCGUgaCGGccGCCaCCCCGCCGGAUCu-- -3'
miRNA:   3'- cGCGa-GCC--CGG-GGGGCGGCCUAGcca -5'
11093 3' -66.3 NC_002794.1 + 86299 0.67 0.499678
Target:  5'- aUGCUCcGGCCCgagCCCGaCCGGAUgcucCGGa -3'
miRNA:   3'- cGCGAGcCCGGG---GGGC-GGCCUA----GCCa -5'
11093 3' -66.3 NC_002794.1 + 183287 0.67 0.499678
Target:  5'- cGCGCggaUCGGGCCCggCGuCUGGAaCGGg -3'
miRNA:   3'- -CGCG---AGCCCGGGggGC-GGCCUaGCCa -5'
11093 3' -66.3 NC_002794.1 + 129231 0.67 0.499678
Target:  5'- gGCGCgaaCGGGCggCUCCGgCGGAcUCGGg -3'
miRNA:   3'- -CGCGa--GCCCGg-GGGGCgGCCU-AGCCa -5'
11093 3' -66.3 NC_002794.1 + 146691 0.66 0.508503
Target:  5'- gGCGCUCGaGGCCgaCUGCgGGAgcuGGUg -3'
miRNA:   3'- -CGCGAGC-CCGGggGGCGgCCUag-CCA- -5'
11093 3' -66.3 NC_002794.1 + 19806 0.66 0.517393
Target:  5'- cCGCUCGGaCCgCgCGCCGGAcUGGa -3'
miRNA:   3'- cGCGAGCCcGGgGgGCGGCCUaGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.