miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 184031 0.66 0.943048
Target:  5'- cACGGCAccGCGcgCAGCGcgcGGucgcgGGCCGCGGc -3'
miRNA:   3'- -UGUCGU--CGCa-GUCGCu--CC-----UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 121528 0.66 0.943048
Target:  5'- cCGGCGGuCGUCu-CGAcGGAGCC-CGGu -3'
miRNA:   3'- uGUCGUC-GCAGucGCU-CCUUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 147622 0.66 0.943048
Target:  5'- -uGGCAGgCGUCGGaGAGGGuCCGCu- -3'
miRNA:   3'- ugUCGUC-GCAGUCgCUCCUuGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 92315 0.66 0.943048
Target:  5'- -gGGC-GCGggCGGCGGGGGcCCggGCGGg -3'
miRNA:   3'- ugUCGuCGCa-GUCGCUCCUuGG--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 117980 0.66 0.938489
Target:  5'- cCAGCuGGUGguaCAGCaGGGGcuGCCGCGGc -3'
miRNA:   3'- uGUCG-UCGCa--GUCGcUCCU--UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 58754 0.66 0.938489
Target:  5'- -gGGCAGCu--GGCgGAGGAGCCGCu- -3'
miRNA:   3'- ugUCGUCGcagUCG-CUCCUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 60607 0.66 0.938489
Target:  5'- cGCAGCAGCaaCAGCa--GAACCggACGGg -3'
miRNA:   3'- -UGUCGUCGcaGUCGcucCUUGG--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 142403 0.66 0.938489
Target:  5'- uGCAgGCGGCGUCGGCGGcgccGGG--CGCGa -3'
miRNA:   3'- -UGU-CGUCGCAGUCGCU----CCUugGUGCc -5'
11093 5' -56.3 NC_002794.1 + 77993 0.66 0.938489
Target:  5'- aACGGCgGGCGUuguucCGGCGGcGGcGCCGuCGGg -3'
miRNA:   3'- -UGUCG-UCGCA-----GUCGCU-CCuUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 112318 0.66 0.938489
Target:  5'- uCGGCGcCGaCGGCGGGGAGCgCGcCGGc -3'
miRNA:   3'- uGUCGUcGCaGUCGCUCCUUG-GU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 94217 0.66 0.938489
Target:  5'- gACGGUGGCGgcgacgGGCGGGcGGGCCggugACGGa -3'
miRNA:   3'- -UGUCGUCGCag----UCGCUC-CUUGG----UGCC- -5'
11093 5' -56.3 NC_002794.1 + 120079 0.66 0.938021
Target:  5'- cGCGGCGGUGgCGGCGAcGAccgugccgagcgcGCCGCGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGCUcCU-------------UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 116862 0.66 0.938021
Target:  5'- uGCGGCGGCcgugucgcgcucGUCAGgGGGGcGCCggcgccgucuccgGCGGc -3'
miRNA:   3'- -UGUCGUCG------------CAGUCgCUCCuUGG-------------UGCC- -5'
11093 5' -56.3 NC_002794.1 + 55952 0.66 0.933704
Target:  5'- cGCAGCAGgaaCGgguagUAGuCGAGGuggauggcguAGCCGCGGg -3'
miRNA:   3'- -UGUCGUC---GCa----GUC-GCUCC----------UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 34092 0.66 0.933704
Target:  5'- -gGGCAGcCGUCgGGCGGcccGGACCGCGa -3'
miRNA:   3'- ugUCGUC-GCAG-UCGCUc--CUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 103900 0.66 0.933704
Target:  5'- -gAGCAGCGg-GGCGAGaacGCCGCGc -3'
miRNA:   3'- ugUCGUCGCagUCGCUCcu-UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 44557 0.66 0.933704
Target:  5'- gGCGGCGGCGcccguugacgUCAcGCGGGaccGAGCCACc- -3'
miRNA:   3'- -UGUCGUCGC----------AGU-CGCUC---CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 149280 0.66 0.933704
Target:  5'- cCGGCGGCG-CGGCGGcucGCuCACGGg -3'
miRNA:   3'- uGUCGUCGCaGUCGCUccuUG-GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 186286 0.66 0.933704
Target:  5'- gGCGGCAccGCGgccaGGCGGccGGucGCCGCGGc -3'
miRNA:   3'- -UGUCGU--CGCag--UCGCU--CCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 109936 0.66 0.933704
Target:  5'- cCAGUucugGGgGUCAGgGAGG-GCCGgGGg -3'
miRNA:   3'- uGUCG----UCgCAGUCgCUCCuUGGUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.