Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11093 | 5' | -56.3 | NC_002794.1 | + | 147622 | 0.66 | 0.943048 |
Target: 5'- -uGGCAGgCGUCGGaGAGGGuCCGCu- -3' miRNA: 3'- ugUCGUC-GCAGUCgCUCCUuGGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 94217 | 0.66 | 0.938489 |
Target: 5'- gACGGUGGCGgcgacgGGCGGGcGGGCCggugACGGa -3' miRNA: 3'- -UGUCGUCGCag----UCGCUC-CUUGG----UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 92315 | 0.66 | 0.943048 |
Target: 5'- -gGGC-GCGggCGGCGGGGGcCCggGCGGg -3' miRNA: 3'- ugUCGuCGCa-GUCGCUCCUuGG--UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 112318 | 0.66 | 0.938489 |
Target: 5'- uCGGCGcCGaCGGCGGGGAGCgCGcCGGc -3' miRNA: 3'- uGUCGUcGCaGUCGCUCCUUG-GU-GCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 77993 | 0.66 | 0.938489 |
Target: 5'- aACGGCgGGCGUuguucCGGCGGcGGcGCCGuCGGg -3' miRNA: 3'- -UGUCG-UCGCA-----GUCGCU-CCuUGGU-GCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 142403 | 0.66 | 0.938489 |
Target: 5'- uGCAgGCGGCGUCGGCGGcgccGGG--CGCGa -3' miRNA: 3'- -UGU-CGUCGCAGUCGCU----CCUugGUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 60607 | 0.66 | 0.938489 |
Target: 5'- cGCAGCAGCaaCAGCa--GAACCggACGGg -3' miRNA: 3'- -UGUCGUCGcaGUCGcucCUUGG--UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 186286 | 0.66 | 0.933704 |
Target: 5'- gGCGGCAccGCGgccaGGCGGccGGucGCCGCGGc -3' miRNA: 3'- -UGUCGU--CGCag--UCGCU--CCu-UGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 185183 | 0.66 | 0.933704 |
Target: 5'- cGCGGuCGGCGcggUCGGCGcGGucAUCGCGGc -3' miRNA: 3'- -UGUC-GUCGC---AGUCGCuCCu-UGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 116862 | 0.66 | 0.938021 |
Target: 5'- uGCGGCGGCcgugucgcgcucGUCAGgGGGGcGCCggcgccgucuccgGCGGc -3' miRNA: 3'- -UGUCGUCG------------CAGUCgCUCCuUGG-------------UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 120079 | 0.66 | 0.938021 |
Target: 5'- cGCGGCGGUGgCGGCGAcGAccgugccgagcgcGCCGCGc -3' miRNA: 3'- -UGUCGUCGCaGUCGCUcCU-------------UGGUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 117980 | 0.66 | 0.938489 |
Target: 5'- cCAGCuGGUGguaCAGCaGGGGcuGCCGCGGc -3' miRNA: 3'- uGUCG-UCGCa--GUCGcUCCU--UGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 58754 | 0.66 | 0.938489 |
Target: 5'- -gGGCAGCu--GGCgGAGGAGCCGCu- -3' miRNA: 3'- ugUCGUCGcagUCG-CUCCUUGGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 112860 | 0.67 | 0.906345 |
Target: 5'- cGCAGCAGCugcugCAGCGcGc--CCACGGg -3' miRNA: 3'- -UGUCGUCGca---GUCGCuCcuuGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 140189 | 0.67 | 0.906345 |
Target: 5'- gGCGaCGGCGUCGuCGAGGGgcgACC-CGGg -3' miRNA: 3'- -UGUcGUCGCAGUcGCUCCU---UGGuGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 123321 | 0.67 | 0.912273 |
Target: 5'- aGCAGCAGgGgccgCAGCuGGGggUgGCGu -3' miRNA: 3'- -UGUCGUCgCa---GUCGcUCCuuGgUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 115834 | 0.67 | 0.912273 |
Target: 5'- uCGGCGGgGccCGGCGGGcucGGGCCugGGa -3' miRNA: 3'- uGUCGUCgCa-GUCGCUC---CUUGGugCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 63777 | 0.67 | 0.912273 |
Target: 5'- aACAGCugauCGUCgaAGUGcGGAACCGCGa -3' miRNA: 3'- -UGUCGuc--GCAG--UCGCuCCUUGGUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 53617 | 0.67 | 0.912273 |
Target: 5'- cGCcGCAGCGUCGGacggaCGAGGucgGCCGagcCGGc -3' miRNA: 3'- -UGuCGUCGCAGUC-----GCUCCu--UGGU---GCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 37869 | 0.67 | 0.906345 |
Target: 5'- cCGGuCGGCGUCucgggcGGCGGGGGcggugGCgGCGGc -3' miRNA: 3'- uGUC-GUCGCAG------UCGCUCCU-----UGgUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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