miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 32581 0.67 0.893817
Target:  5'- cGCGGCGGUGcCGGgGccGGGGCCGgGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCgCu-CCUUGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 193092 0.67 0.887222
Target:  5'- cGCAGCAGCGUC-GUGAucaccgaagagGGGugCACc- -3'
miRNA:   3'- -UGUCGUCGCAGuCGCU-----------CCUugGUGcc -5'
11093 5' -56.3 NC_002794.1 + 191677 0.67 0.887222
Target:  5'- gGCAGCGGCGgCGGCGuGcccucgucgcGGACCACc- -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuC----------CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 112543 0.67 0.887222
Target:  5'- -aAGUAGCGgUAGCGGGGcucGCCGcCGGc -3'
miRNA:   3'- ugUCGUCGCaGUCGCUCCu--UGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 120049 0.67 0.887222
Target:  5'- gACGGCGGCGgUGGCG----GCCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuccuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 56163 0.67 0.88655
Target:  5'- aGCGGCAGCGgcccCGGUgcacguaGAGcaccGGGCCGCGGc -3'
miRNA:   3'- -UGUCGUCGCa---GUCG-------CUC----CUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 58875 0.67 0.900192
Target:  5'- gGCAGCcguGCGcgccgcgCAGCucGAGGcccgcAACCACGGg -3'
miRNA:   3'- -UGUCGu--CGCa------GUCG--CUCC-----UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 100526 0.67 0.900192
Target:  5'- cCGGuCGGCGgCAcCGAGGAGCaGCGGg -3'
miRNA:   3'- uGUC-GUCGCaGUcGCUCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 53617 0.67 0.912273
Target:  5'- cGCcGCAGCGUCGGacggaCGAGGucgGCCGagcCGGc -3'
miRNA:   3'- -UGuCGUCGCAGUC-----GCUCCu--UGGU---GCC- -5'
11093 5' -56.3 NC_002794.1 + 63777 0.67 0.912273
Target:  5'- aACAGCugauCGUCgaAGUGcGGAACCGCGa -3'
miRNA:   3'- -UGUCGuc--GCAG--UCGCuCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 115834 0.67 0.912273
Target:  5'- uCGGCGGgGccCGGCGGGcucGGGCCugGGa -3'
miRNA:   3'- uGUCGUCgCa-GUCGCUC---CUUGGugCC- -5'
11093 5' -56.3 NC_002794.1 + 123321 0.67 0.912273
Target:  5'- aGCAGCAGgGgccgCAGCuGGGggUgGCGu -3'
miRNA:   3'- -UGUCGUCgCa---GUCGcUCCuuGgUGCc -5'
11093 5' -56.3 NC_002794.1 + 140189 0.67 0.906345
Target:  5'- gGCGaCGGCGUCGuCGAGGGgcgACC-CGGg -3'
miRNA:   3'- -UGUcGUCGCAGUcGCUCCU---UGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 112860 0.67 0.906345
Target:  5'- cGCAGCAGCugcugCAGCGcGc--CCACGGg -3'
miRNA:   3'- -UGUCGUCGca---GUCGCuCcuuGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 37869 0.67 0.906345
Target:  5'- cCGGuCGGCGUCucgggcGGCGGGGGcggugGCgGCGGc -3'
miRNA:   3'- uGUC-GUCGCAG------UCGCUCCU-----UGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 117302 0.67 0.90268
Target:  5'- uGCGGC-GUGUCgagcgacuggaagguGGCGAGGAuccGCCGCa- -3'
miRNA:   3'- -UGUCGuCGCAG---------------UCGCUCCU---UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 145738 0.67 0.90268
Target:  5'- gGCGGCGGCGcCGGCaucgacggcgaccccGAGcGAgcGCCACGcGg -3'
miRNA:   3'- -UGUCGUCGCaGUCG---------------CUC-CU--UGGUGC-C- -5'
11093 5' -56.3 NC_002794.1 + 138770 0.67 0.900192
Target:  5'- cGCGGCGGuCGguggaGGgGAGGggUCACGc -3'
miRNA:   3'- -UGUCGUC-GCag---UCgCUCCuuGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 101514 0.67 0.900192
Target:  5'- uGCGGCAcaCGcCGGCGGGGuGCC-CGGc -3'
miRNA:   3'- -UGUCGUc-GCaGUCGCUCCuUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 41805 0.67 0.900192
Target:  5'- -aAGCAGaCGUcCAGCGAGGcGCCcaGCaGGc -3'
miRNA:   3'- ugUCGUC-GCA-GUCGCUCCuUGG--UG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.