miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 117302 0.67 0.90268
Target:  5'- uGCGGC-GUGUCgagcgacuggaagguGGCGAGGAuccGCCGCa- -3'
miRNA:   3'- -UGUCGuCGCAG---------------UCGCUCCU---UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 18705 0.68 0.866159
Target:  5'- gGCGGCGGCGgucCGGaCGucGGAGCCgACGa -3'
miRNA:   3'- -UGUCGUCGCa--GUC-GCu-CCUUGG-UGCc -5'
11093 5' -56.3 NC_002794.1 + 92267 0.68 0.858728
Target:  5'- gGCGGCGGCGcCgGGCGAGGcGCgCAaGGu -3'
miRNA:   3'- -UGUCGUCGCaG-UCGCUCCuUG-GUgCC- -5'
11093 5' -56.3 NC_002794.1 + 116016 0.68 0.858728
Target:  5'- cGCGGUGGCGaUUGGCGcGGGGACCGgagaGGa -3'
miRNA:   3'- -UGUCGUCGC-AGUCGC-UCCUUGGUg---CC- -5'
11093 5' -56.3 NC_002794.1 + 113887 0.68 0.858728
Target:  5'- cGCGGCGcGCGUCGGCGcggucugcAGGAagGCCuccagguCGGc -3'
miRNA:   3'- -UGUCGU-CGCAGUCGC--------UCCU--UGGu------GCC- -5'
11093 5' -56.3 NC_002794.1 + 190984 0.68 0.858728
Target:  5'- aGCAgGCAGCG-CGGCGAcGGcgUCGCGa -3'
miRNA:   3'- -UGU-CGUCGCaGUCGCU-CCuuGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 32269 0.68 0.858728
Target:  5'- gACGGcCGGcCGaUCGGCGAGcGAcgccgccgccGCCGCGGc -3'
miRNA:   3'- -UGUC-GUC-GC-AGUCGCUC-CU----------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 79436 0.68 0.858728
Target:  5'- gGCGGCGGCGgCGGCGAcc-GgCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCUccuUgGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 89675 0.68 0.8557
Target:  5'- cGCGGCGGUGggagggcuguucgCGGCGAauauaaacGGcGCCGCGGu -3'
miRNA:   3'- -UGUCGUCGCa------------GUCGCU--------CCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 179966 0.68 0.866159
Target:  5'- gACAGCAGgagCGGC-AGGAGCCaagGCGGu -3'
miRNA:   3'- -UGUCGUCgcaGUCGcUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 184579 0.68 0.866159
Target:  5'- cGCGGCGGCGgCGGCcacgcgcGGCCGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCGcucc---UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 110275 0.68 0.866159
Target:  5'- gACGGCGGCcgccGUCcuCGGGcccgaGAGCCGCGGg -3'
miRNA:   3'- -UGUCGUCG----CAGucGCUC-----CUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 87381 0.68 0.880411
Target:  5'- -gGGCGGCG-CGGCcaGAGcGAGCCGCa- -3'
miRNA:   3'- ugUCGUCGCaGUCG--CUC-CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 109174 0.68 0.880411
Target:  5'- -gAGCGGCGgUAGCGGcGGAGgCAgCGGg -3'
miRNA:   3'- ugUCGUCGCaGUCGCU-CCUUgGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 107058 0.68 0.877627
Target:  5'- -aGGCGGCGggcgCGGCGccgccggcaugucGGAGCCgACGGg -3'
miRNA:   3'- ugUCGUCGCa---GUCGCu------------CCUUGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 111598 0.68 0.880411
Target:  5'- -gAGCGGgGUgaucucccaggcCGGCGGGGccGCCGCGGc -3'
miRNA:   3'- ugUCGUCgCA------------GUCGCUCCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 66850 0.68 0.873389
Target:  5'- cGCcGuCGGCG-CGGCGAGG--CCGCGGc -3'
miRNA:   3'- -UGuC-GUCGCaGUCGCUCCuuGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 175901 0.68 0.873389
Target:  5'- --cGUuGCGUCAGCuGGGAAcacucCCACGGu -3'
miRNA:   3'- uguCGuCGCAGUCGcUCCUU-----GGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 94010 0.68 0.873389
Target:  5'- cCGGCGGCGggcCGGCGGGuuccGCCgGCGGg -3'
miRNA:   3'- uGUCGUCGCa--GUCGCUCcu--UGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 35149 0.68 0.851101
Target:  5'- gGCAGCucGUGUCGacCGAGGAGCaccgCGCGGa -3'
miRNA:   3'- -UGUCGu-CGCAGUc-GCUCCUUG----GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.