miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 111598 0.68 0.880411
Target:  5'- -gAGCGGgGUgaucucccaggcCGGCGGGGccGCCGCGGc -3'
miRNA:   3'- ugUCGUCgCA------------GUCGCUCCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 66850 0.68 0.873389
Target:  5'- cGCcGuCGGCG-CGGCGAGG--CCGCGGc -3'
miRNA:   3'- -UGuC-GUCGCaGUCGCUCCuuGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 175901 0.68 0.873389
Target:  5'- --cGUuGCGUCAGCuGGGAAcacucCCACGGu -3'
miRNA:   3'- uguCGuCGCAGUCGcUCCUU-----GGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 94010 0.68 0.873389
Target:  5'- cCGGCGGCGggcCGGCGGGuuccGCCgGCGGg -3'
miRNA:   3'- uGUCGUCGCa--GUCGCUCcu--UGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 110275 0.68 0.866159
Target:  5'- gACGGCGGCcgccGUCcuCGGGcccgaGAGCCGCGGg -3'
miRNA:   3'- -UGUCGUCG----CAGucGCUC-----CUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 184579 0.68 0.866159
Target:  5'- cGCGGCGGCGgCGGCcacgcgcGGCCGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCGcucc---UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 179966 0.68 0.866159
Target:  5'- gACAGCAGgagCGGC-AGGAGCCaagGCGGu -3'
miRNA:   3'- -UGUCGUCgcaGUCGcUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 18705 0.68 0.866159
Target:  5'- gGCGGCGGCGgucCGGaCGucGGAGCCgACGa -3'
miRNA:   3'- -UGUCGUCGCa--GUC-GCu-CCUUGG-UGCc -5'
11093 5' -56.3 NC_002794.1 + 179681 0.69 0.801578
Target:  5'- cGCGGCGGCGaCGGUGGcGGcGGCgACGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU-CC-UUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 119491 0.69 0.822114
Target:  5'- uCGGCuGCGUCcucggggucgucggcGGCGcGGAgccgGCCGCGGa -3'
miRNA:   3'- uGUCGuCGCAG---------------UCGCuCCU----UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 32849 0.69 0.801578
Target:  5'- uCGGUAGCGgCAGCGGccGAGCCgGCGGg -3'
miRNA:   3'- uGUCGUCGCaGUCGCUc-CUUGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 147044 0.69 0.800703
Target:  5'- -aAGC--CGUCGGCGGccggucuaaggacGGAGCCGCGGg -3'
miRNA:   3'- ugUCGucGCAGUCGCU-------------CCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 38434 0.69 0.801578
Target:  5'- cAUGGCGGCGggcCGGacuGAGGAGCCggcGCGGc -3'
miRNA:   3'- -UGUCGUCGCa--GUCg--CUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 110597 0.69 0.827103
Target:  5'- -gGGguGCGUgaacgugaAGCGgagcGGGAGCCGCGGc -3'
miRNA:   3'- ugUCguCGCAg-------UCGC----UCCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 101640 0.69 0.827103
Target:  5'- --cGCgAGCGUgGGCGGGcGGGCgGCGGu -3'
miRNA:   3'- uguCG-UCGCAgUCGCUC-CUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 87349 0.69 0.835282
Target:  5'- cCAGCAGCGggucCGGCGGcGAGCgGCGu -3'
miRNA:   3'- uGUCGUCGCa---GUCGCUcCUUGgUGCc -5'
11093 5' -56.3 NC_002794.1 + 184811 0.69 0.835282
Target:  5'- uCAGCAGCGUCA-CGGGGca-CGCGu -3'
miRNA:   3'- uGUCGUCGCAGUcGCUCCuugGUGCc -5'
11093 5' -56.3 NC_002794.1 + 136460 0.69 0.835282
Target:  5'- -gGGuCAG-GUCGGCGAGGuucGCCGCGu -3'
miRNA:   3'- ugUC-GUCgCAGUCGCUCCu--UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 88052 0.69 0.835282
Target:  5'- gACAGUAaacGCG-CGcGCGAGGGggcgggGCCGCGGu -3'
miRNA:   3'- -UGUCGU---CGCaGU-CGCUCCU------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 116132 0.69 0.792765
Target:  5'- cGCGGCGGCGgCGGCG-GcGGCCAgGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuCcUUGGUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.