Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11093 | 5' | -56.3 | NC_002794.1 | + | 142959 | 0.71 | 0.688527 |
Target: 5'- uCGGCGGCGUCgAGCuccucgucGAGGGGCUGCGu -3' miRNA: 3'- uGUCGUCGCAG-UCG--------CUCCUUGGUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 26651 | 0.71 | 0.708217 |
Target: 5'- gACGGCGGCcggcucGUCGGCGGGGuggagcGCCACc- -3' miRNA: 3'- -UGUCGUCG------CAGUCGCUCCu-----UGGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 142320 | 0.71 | 0.727659 |
Target: 5'- gGCGGCGGCGcaGGCGGcGGAgGCgGCGGa -3' miRNA: 3'- -UGUCGUCGCagUCGCU-CCU-UGgUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 34846 | 0.71 | 0.717973 |
Target: 5'- -gAGCgGGCGUCggAGCG-GGcGCCGCGGg -3' miRNA: 3'- ugUCG-UCGCAG--UCGCuCCuUGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 101279 | 0.71 | 0.737267 |
Target: 5'- cCGGUGGCGgCGGCGGGGAggagacgacguACCAgGGc -3' miRNA: 3'- uGUCGUCGCaGUCGCUCCU-----------UGGUgCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 89732 | 0.71 | 0.708217 |
Target: 5'- --cGCGGCGUCGGUccuuGGGGAuUCGCGGc -3' miRNA: 3'- uguCGUCGCAGUCG----CUCCUuGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 156457 | 0.7 | 0.774731 |
Target: 5'- -aGGCGGUugGUUagggGGCGGGGGACgACGGg -3' miRNA: 3'- ugUCGUCG--CAG----UCGCUCCUUGgUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 72422 | 0.7 | 0.783814 |
Target: 5'- cGCGGCGGaggaggaGcCGGCgGAGGGACCgGCGGc -3' miRNA: 3'- -UGUCGUCg------CaGUCG-CUCCUUGG-UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 179240 | 0.7 | 0.774731 |
Target: 5'- aACAGguCGGCGUCGGCGAGaccGCCGCc- -3' miRNA: 3'- -UGUC--GUCGCAGUCGCUCcu-UGGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 9114 | 0.7 | 0.783814 |
Target: 5'- aGCAGCAGUGaggCcgGGCGAcGAACCGCGc -3' miRNA: 3'- -UGUCGUCGCa--G--UCGCUcCUUGGUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 189839 | 0.7 | 0.783814 |
Target: 5'- cACAGCGGgGUCucGGcCGcGGAGCCGuCGGc -3' miRNA: 3'- -UGUCGUCgCAG--UC-GCuCCUUGGU-GCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 107536 | 0.7 | 0.774731 |
Target: 5'- gGC-GCGGCGcCGGCGGcGAcgACCGCGGu -3' miRNA: 3'- -UGuCGUCGCaGUCGCUcCU--UGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 129941 | 0.7 | 0.756209 |
Target: 5'- gACGGCGGCGgCGGCGGcucuGGAgACCuCGGu -3' miRNA: 3'- -UGUCGUCGCaGUCGCU----CCU-UGGuGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 34280 | 0.7 | 0.765527 |
Target: 5'- gGCGGcCAGCGcCAGCGAccgGGAGCUcuACGa -3' miRNA: 3'- -UGUC-GUCGCaGUCGCU---CCUUGG--UGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 126672 | 0.7 | 0.774731 |
Target: 5'- gGCcGCGGCGagggcccgaaUCGGgGAGGGaggggcGCCGCGGa -3' miRNA: 3'- -UGuCGUCGC----------AGUCgCUCCU------UGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 88052 | 0.69 | 0.835282 |
Target: 5'- gACAGUAaacGCG-CGcGCGAGGGggcgggGCCGCGGu -3' miRNA: 3'- -UGUCGU---CGCaGU-CGCUCCU------UGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 136460 | 0.69 | 0.835282 |
Target: 5'- -gGGuCAG-GUCGGCGAGGuucGCCGCGu -3' miRNA: 3'- ugUC-GUCgCAGUCGCUCCu--UGGUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 101640 | 0.69 | 0.827103 |
Target: 5'- --cGCgAGCGUgGGCGGGcGGGCgGCGGu -3' miRNA: 3'- uguCG-UCGCAgUCGCUC-CUUGgUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 87349 | 0.69 | 0.835282 |
Target: 5'- cCAGCAGCGggucCGGCGGcGAGCgGCGu -3' miRNA: 3'- uGUCGUCGCa---GUCGCUcCUUGgUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 147044 | 0.69 | 0.800703 |
Target: 5'- -aAGC--CGUCGGCGGccggucuaaggacGGAGCCGCGGg -3' miRNA: 3'- ugUCGucGCAGUCGCU-------------CCUUGGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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