miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 184811 0.69 0.835282
Target:  5'- uCAGCAGCGUCA-CGGGGca-CGCGu -3'
miRNA:   3'- uGUCGUCGCAGUcGCUCCuugGUGCc -5'
11093 5' -56.3 NC_002794.1 + 87349 0.69 0.835282
Target:  5'- cCAGCAGCGggucCGGCGGcGAGCgGCGu -3'
miRNA:   3'- uGUCGUCGCa---GUCGCUcCUUGgUGCc -5'
11093 5' -56.3 NC_002794.1 + 38434 0.69 0.801578
Target:  5'- cAUGGCGGCGggcCGGacuGAGGAGCCggcGCGGc -3'
miRNA:   3'- -UGUCGUCGCa--GUCg--CUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 179681 0.69 0.801578
Target:  5'- cGCGGCGGCGaCGGUGGcGGcGGCgACGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU-CC-UUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 32849 0.69 0.801578
Target:  5'- uCGGUAGCGgCAGCGGccGAGCCgGCGGg -3'
miRNA:   3'- uGUCGUCGCaGUCGCUc-CUUGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 147044 0.69 0.800703
Target:  5'- -aAGC--CGUCGGCGGccggucuaaggacGGAGCCGCGGg -3'
miRNA:   3'- ugUCGucGCAGUCGCU-------------CCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 136460 0.69 0.835282
Target:  5'- -gGGuCAG-GUCGGCGAGGuucGCCGCGu -3'
miRNA:   3'- ugUC-GUCgCAGUCGCUCCu--UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 87381 0.68 0.880411
Target:  5'- -gGGCGGCG-CGGCcaGAGcGAGCCGCa- -3'
miRNA:   3'- ugUCGUCGCaGUCG--CUC-CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 113887 0.68 0.858728
Target:  5'- cGCGGCGcGCGUCGGCGcggucugcAGGAagGCCuccagguCGGc -3'
miRNA:   3'- -UGUCGU-CGCAGUCGC--------UCCU--UGGu------GCC- -5'
11093 5' -56.3 NC_002794.1 + 190984 0.68 0.858728
Target:  5'- aGCAgGCAGCG-CGGCGAcGGcgUCGCGa -3'
miRNA:   3'- -UGU-CGUCGCaGUCGCU-CCuuGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 32269 0.68 0.858728
Target:  5'- gACGGcCGGcCGaUCGGCGAGcGAcgccgccgccGCCGCGGc -3'
miRNA:   3'- -UGUC-GUC-GC-AGUCGCUC-CU----------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 79436 0.68 0.858728
Target:  5'- gGCGGCGGCGgCGGCGAcc-GgCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCUccuUgGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 89675 0.68 0.8557
Target:  5'- cGCGGCGGUGggagggcuguucgCGGCGAauauaaacGGcGCCGCGGu -3'
miRNA:   3'- -UGUCGUCGCa------------GUCGCU--------CCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 116016 0.68 0.858728
Target:  5'- cGCGGUGGCGaUUGGCGcGGGGACCGgagaGGa -3'
miRNA:   3'- -UGUCGUCGC-AGUCGC-UCCUUGGUg---CC- -5'
11093 5' -56.3 NC_002794.1 + 92267 0.68 0.858728
Target:  5'- gGCGGCGGCGcCgGGCGAGGcGCgCAaGGu -3'
miRNA:   3'- -UGUCGUCGCaG-UCGCUCCuUG-GUgCC- -5'
11093 5' -56.3 NC_002794.1 + 18705 0.68 0.866159
Target:  5'- gGCGGCGGCGgucCGGaCGucGGAGCCgACGa -3'
miRNA:   3'- -UGUCGUCGCa--GUC-GCu-CCUUGG-UGCc -5'
11093 5' -56.3 NC_002794.1 + 179966 0.68 0.866159
Target:  5'- gACAGCAGgagCGGC-AGGAGCCaagGCGGu -3'
miRNA:   3'- -UGUCGUCgcaGUCGcUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 184579 0.68 0.866159
Target:  5'- cGCGGCGGCGgCGGCcacgcgcGGCCGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCGcucc---UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 108332 0.68 0.843283
Target:  5'- gACGGCGGCG-CAG-GAGGAggugGCggaGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCgCUCCU----UGg--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 182196 0.68 0.880411
Target:  5'- gGCcuCGGCGcCGGCGucGcGCCACGGg -3'
miRNA:   3'- -UGucGUCGCaGUCGCucCuUGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.