miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 142218 0.85 0.140375
Target:  5'- gGCAGCGGCGgu-GCGGGGAGCgGCGGa -3'
miRNA:   3'- -UGUCGUCGCaguCGCUCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 23914 0.84 0.15024
Target:  5'- uGCAGCAGCGUgGGCGAGcGAgcgauccgagcccgGCCGCGGc -3'
miRNA:   3'- -UGUCGUCGCAgUCGCUC-CU--------------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 118272 0.82 0.193879
Target:  5'- gGCGGCGGCGcCGGCGucGGGGACCGCGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGC--UCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 116951 0.8 0.276952
Target:  5'- gGCGGCGGCGUCGGCG-GGcGCaggaACGGg -3'
miRNA:   3'- -UGUCGUCGCAGUCGCuCCuUGg---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 142171 0.78 0.331839
Target:  5'- cCGGCAGCGUCGgcagcGCGAGGAGCgGCa- -3'
miRNA:   3'- uGUCGUCGCAGU-----CGCUCCUUGgUGcc -5'
11093 5' -56.3 NC_002794.1 + 180154 0.78 0.346753
Target:  5'- cGCAGCAGCaGUUGGUGGGGAuaGCCGUGGg -3'
miRNA:   3'- -UGUCGUCG-CAGUCGCUCCU--UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 95837 0.76 0.428278
Target:  5'- aGCGGCGGCGgCGGcCGGGGAgGCgGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUC-GCUCCU-UGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 112355 0.76 0.437036
Target:  5'- cCGGCGGCGg-GGCGGGGAGCUGCuGGa -3'
miRNA:   3'- uGUCGUCGCagUCGCUCCUUGGUG-CC- -5'
11093 5' -56.3 NC_002794.1 + 32879 0.76 0.454856
Target:  5'- gGCGGCGGCGgCGGCGGcaucauggagcGGAACCAguCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU-----------CCUUGGU--GCC- -5'
11093 5' -56.3 NC_002794.1 + 14282 0.76 0.463912
Target:  5'- uCGGCuggAGCGUCAGCGucGAGgCGCGGg -3'
miRNA:   3'- uGUCG---UCGCAGUCGCucCUUgGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 70251 0.75 0.473061
Target:  5'- cGCAGCAGaCGcgCAGCGAcGGAgGCCGCGa -3'
miRNA:   3'- -UGUCGUC-GCa-GUCGCU-CCU-UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 94048 0.75 0.473061
Target:  5'- aGCGGCGGCGgugcgggggCGGCGGGGGGCgAgGGc -3'
miRNA:   3'- -UGUCGUCGCa--------GUCGCUCCUUGgUgCC- -5'
11093 5' -56.3 NC_002794.1 + 154324 0.75 0.491626
Target:  5'- -gAGCGGCGUCGGuCGucccGGGuGCCGCGGc -3'
miRNA:   3'- ugUCGUCGCAGUC-GC----UCCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 87003 0.75 0.501034
Target:  5'- uCGGCGGCGUggguucCGGCGAGGGuCCGCaGGa -3'
miRNA:   3'- uGUCGUCGCA------GUCGCUCCUuGGUG-CC- -5'
11093 5' -56.3 NC_002794.1 + 20982 0.75 0.501034
Target:  5'- gGCAGCGGCGgCGGC-AGcGACCGCGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGcUCcUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 46316 0.75 0.51052
Target:  5'- cGCGGCGGCGaCGGCGccGucGCCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCucCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 185475 0.74 0.539406
Target:  5'- -gGGCGGCGgccgCGGCGAgGGGACCGCc- -3'
miRNA:   3'- ugUCGUCGCa---GUCGCU-CCUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 32918 0.74 0.539406
Target:  5'- gGCGGCAGCagGUCGGCG-GGAagcgcucggcgGCCAgGGa -3'
miRNA:   3'- -UGUCGUCG--CAGUCGCuCCU-----------UGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 120875 0.74 0.558968
Target:  5'- uCGGCuGGUGUCcgaacGGCGAGGucACCGCGGg -3'
miRNA:   3'- uGUCG-UCGCAG-----UCGCUCCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 12218 0.74 0.567837
Target:  5'- cCGGCGGCGUCGGCGGcgccggcGGcgccguCCGCGGc -3'
miRNA:   3'- uGUCGUCGCAGUCGCU-------CCuu----GGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.