miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 19462 0.74 0.568825
Target:  5'- aGCGGCGGCGgCGGCG-GGAcCCGcCGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuCCUuGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 37757 0.73 0.578725
Target:  5'- cGCGGCGGCGcCGGCG-GGAGCgGCc- -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuCCUUGgUGcc -5'
11093 5' -56.3 NC_002794.1 + 65933 0.73 0.578725
Target:  5'- gGCGGUGGCGUCGGCGGcgguaucgucGcGAGCgGCGGc -3'
miRNA:   3'- -UGUCGUCGCAGUCGCU----------C-CUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 111087 0.73 0.587666
Target:  5'- uCGGCAGgGUCGGCGGgcccggcGGGACCGUGGc -3'
miRNA:   3'- uGUCGUCgCAGUCGCU-------CCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 101249 0.73 0.588661
Target:  5'- cCGGC-GCG-CAGCGGGGGGCCGCc- -3'
miRNA:   3'- uGUCGuCGCaGUCGCUCCUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 95781 0.73 0.588661
Target:  5'- gGCGGCcggggcgagaGGCG-CGGCgGAGGAACCGgGGg -3'
miRNA:   3'- -UGUCG----------UCGCaGUCG-CUCCUUGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 53809 0.73 0.598627
Target:  5'- gGCGGgAGCcUCGGCG-GGAGCCucgGCGGg -3'
miRNA:   3'- -UGUCgUCGcAGUCGCuCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 104467 0.73 0.608617
Target:  5'- -gGGCGGCGUguGC-AGGAugcgggcgGCCACGGc -3'
miRNA:   3'- ugUCGUCGCAguCGcUCCU--------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 181431 0.73 0.618624
Target:  5'- --cGCgaAGcCGUCGGCGAGGGGCCGCccGGa -3'
miRNA:   3'- uguCG--UC-GCAGUCGCUCCUUGGUG--CC- -5'
11093 5' -56.3 NC_002794.1 + 142358 0.73 0.628641
Target:  5'- -aGGCGGCGgaggCGGCGgaggcggaGGGAGCgGCGGa -3'
miRNA:   3'- ugUCGUCGCa---GUCGC--------UCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 36986 0.73 0.628641
Target:  5'- cGCGcGCAG-GUCGGCGAGGcgGACC-CGGu -3'
miRNA:   3'- -UGU-CGUCgCAGUCGCUCC--UUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 114570 0.72 0.63866
Target:  5'- gGC-GCAGCGUCAGCGgAGGGugCuCGu -3'
miRNA:   3'- -UGuCGUCGCAGUCGC-UCCUugGuGCc -5'
11093 5' -56.3 NC_002794.1 + 148120 0.72 0.63866
Target:  5'- gACGGuCGGUGUCgGGCGcGGGGCCGcCGGg -3'
miRNA:   3'- -UGUC-GUCGCAG-UCGCuCCUUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 40117 0.72 0.63866
Target:  5'- -gGGCGcGCGagAGCGGaGAGCCACGGg -3'
miRNA:   3'- ugUCGU-CGCagUCGCUcCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 13107 0.72 0.648675
Target:  5'- -gAGguGCGuUCGGCGGGGucGCCGCGcGg -3'
miRNA:   3'- ugUCguCGC-AGUCGCUCCu-UGGUGC-C- -5'
11093 5' -56.3 NC_002794.1 + 55302 0.72 0.658676
Target:  5'- gGCGGCGGCGUC-GCGGcGGG--CGCGGg -3'
miRNA:   3'- -UGUCGUCGCAGuCGCU-CCUugGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 185044 0.72 0.678611
Target:  5'- uACGGCAGCaaCAGCGuGGucugcagccGCCGCGGc -3'
miRNA:   3'- -UGUCGUCGcaGUCGCuCCu--------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 142959 0.71 0.688527
Target:  5'- uCGGCGGCGUCgAGCuccucgucGAGGGGCUGCGu -3'
miRNA:   3'- uGUCGUCGCAG-UCG--------CUCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 107241 0.71 0.698399
Target:  5'- -gGGCGGCGUC-GCGGaccuggcccggcGGAGCCGCGc -3'
miRNA:   3'- ugUCGUCGCAGuCGCU------------CCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 94470 0.71 0.698399
Target:  5'- gACGGCAaCGgCGGCGGcGGAcgcgGCCGCGGg -3'
miRNA:   3'- -UGUCGUcGCaGUCGCU-CCU----UGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.