miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 107241 0.71 0.698399
Target:  5'- -gGGCGGCGUC-GCGGaccuggcccggcGGAGCCGCGc -3'
miRNA:   3'- ugUCGUCGCAGuCGCU------------CCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 89732 0.71 0.708217
Target:  5'- --cGCGGCGUCGGUccuuGGGGAuUCGCGGc -3'
miRNA:   3'- uguCGUCGCAGUCG----CUCCUuGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 26651 0.71 0.708217
Target:  5'- gACGGCGGCcggcucGUCGGCGGGGuggagcGCCACc- -3'
miRNA:   3'- -UGUCGUCG------CAGUCGCUCCu-----UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 34846 0.71 0.717973
Target:  5'- -gAGCgGGCGUCggAGCG-GGcGCCGCGGg -3'
miRNA:   3'- ugUCG-UCGCAG--UCGCuCCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 142320 0.71 0.727659
Target:  5'- gGCGGCGGCGcaGGCGGcGGAgGCgGCGGa -3'
miRNA:   3'- -UGUCGUCGCagUCGCU-CCU-UGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 101279 0.71 0.737267
Target:  5'- cCGGUGGCGgCGGCGGGGAggagacgacguACCAgGGc -3'
miRNA:   3'- uGUCGUCGCaGUCGCUCCU-----------UGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 129941 0.7 0.756209
Target:  5'- gACGGCGGCGgCGGCGGcucuGGAgACCuCGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU----CCU-UGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 34280 0.7 0.765527
Target:  5'- gGCGGcCAGCGcCAGCGAccgGGAGCUcuACGa -3'
miRNA:   3'- -UGUC-GUCGCaGUCGCU---CCUUGG--UGCc -5'
11093 5' -56.3 NC_002794.1 + 156457 0.7 0.774731
Target:  5'- -aGGCGGUugGUUagggGGCGGGGGACgACGGg -3'
miRNA:   3'- ugUCGUCG--CAG----UCGCUCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 179240 0.7 0.774731
Target:  5'- aACAGguCGGCGUCGGCGAGaccGCCGCc- -3'
miRNA:   3'- -UGUC--GUCGCAGUCGCUCcu-UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 107536 0.7 0.774731
Target:  5'- gGC-GCGGCGcCGGCGGcGAcgACCGCGGu -3'
miRNA:   3'- -UGuCGUCGCaGUCGCUcCU--UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 126672 0.7 0.774731
Target:  5'- gGCcGCGGCGagggcccgaaUCGGgGAGGGaggggcGCCGCGGa -3'
miRNA:   3'- -UGuCGUCGC----------AGUCgCUCCU------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 189839 0.7 0.783814
Target:  5'- cACAGCGGgGUCucGGcCGcGGAGCCGuCGGc -3'
miRNA:   3'- -UGUCGUCgCAG--UC-GCuCCUUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 9114 0.7 0.783814
Target:  5'- aGCAGCAGUGaggCcgGGCGAcGAACCGCGc -3'
miRNA:   3'- -UGUCGUCGCa--G--UCGCUcCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 72422 0.7 0.783814
Target:  5'- cGCGGCGGaggaggaGcCGGCgGAGGGACCgGCGGc -3'
miRNA:   3'- -UGUCGUCg------CaGUCG-CUCCUUGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 116132 0.69 0.792765
Target:  5'- cGCGGCGGCGgCGGCG-GcGGCCAgGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuCcUUGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 147044 0.69 0.800703
Target:  5'- -aAGC--CGUCGGCGGccggucuaaggacGGAGCCGCGGg -3'
miRNA:   3'- ugUCGucGCAGUCGCU-------------CCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 179681 0.69 0.801578
Target:  5'- cGCGGCGGCGaCGGUGGcGGcGGCgACGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU-CC-UUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 38434 0.69 0.801578
Target:  5'- cAUGGCGGCGggcCGGacuGAGGAGCCggcGCGGc -3'
miRNA:   3'- -UGUCGUCGCa--GUCg--CUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 32849 0.69 0.801578
Target:  5'- uCGGUAGCGgCAGCGGccGAGCCgGCGGg -3'
miRNA:   3'- uGUCGUCGCaGUCGCUc-CUUGG-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.