miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 119491 0.69 0.822114
Target:  5'- uCGGCuGCGUCcucggggucgucggcGGCGcGGAgccgGCCGCGGa -3'
miRNA:   3'- uGUCGuCGCAG---------------UCGCuCCU----UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 110597 0.69 0.827103
Target:  5'- -gGGguGCGUgaacgugaAGCGgagcGGGAGCCGCGGc -3'
miRNA:   3'- ugUCguCGCAg-------UCGC----UCCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 101640 0.69 0.827103
Target:  5'- --cGCgAGCGUgGGCGGGcGGGCgGCGGu -3'
miRNA:   3'- uguCG-UCGCAgUCGCUC-CUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 184811 0.69 0.835282
Target:  5'- uCAGCAGCGUCA-CGGGGca-CGCGu -3'
miRNA:   3'- uGUCGUCGCAGUcGCUCCuugGUGCc -5'
11093 5' -56.3 NC_002794.1 + 87349 0.69 0.835282
Target:  5'- cCAGCAGCGggucCGGCGGcGAGCgGCGu -3'
miRNA:   3'- uGUCGUCGCa---GUCGCUcCUUGgUGCc -5'
11093 5' -56.3 NC_002794.1 + 88052 0.69 0.835282
Target:  5'- gACAGUAaacGCG-CGcGCGAGGGggcgggGCCGCGGu -3'
miRNA:   3'- -UGUCGU---CGCaGU-CGCUCCU------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 136460 0.69 0.835282
Target:  5'- -gGGuCAG-GUCGGCGAGGuucGCCGCGu -3'
miRNA:   3'- ugUC-GUCgCAGUCGCUCCu--UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 43890 0.68 0.842491
Target:  5'- cCGGCcgucgccGGCGUCucGUGAGGAGCggCGCGGu -3'
miRNA:   3'- uGUCG-------UCGCAGu-CGCUCCUUG--GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 193745 0.68 0.843283
Target:  5'- --cGCGGCuUCGGCGAGcGACCGcCGGc -3'
miRNA:   3'- uguCGUCGcAGUCGCUCcUUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 115569 0.68 0.843283
Target:  5'- -gAGCAGC-UCGGCGAacGGGACguaGCGGc -3'
miRNA:   3'- ugUCGUCGcAGUCGCU--CCUUGg--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 108332 0.68 0.843283
Target:  5'- gACGGCGGCG-CAG-GAGGAggugGCggaGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCgCUCCU----UGg--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 114970 0.68 0.849552
Target:  5'- cGCAGCAGC-UCGGCGcAGGcguccuguaguUCGCGGa -3'
miRNA:   3'- -UGUCGUCGcAGUCGC-UCCuu---------GGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 180684 0.68 0.850327
Target:  5'- cCGGCcgcucccGGCGccCGGCGGGcGGACCAUGGc -3'
miRNA:   3'- uGUCG-------UCGCa-GUCGCUC-CUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 35149 0.68 0.851101
Target:  5'- gGCAGCucGUGUCGacCGAGGAGCaccgCGCGGa -3'
miRNA:   3'- -UGUCGu-CGCAGUc-GCUCCUUG----GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 137788 0.68 0.851101
Target:  5'- aGguGCAG-GUCGcUGAGGAGCCGCaGGa -3'
miRNA:   3'- -UguCGUCgCAGUcGCUCCUUGGUG-CC- -5'
11093 5' -56.3 NC_002794.1 + 89675 0.68 0.8557
Target:  5'- cGCGGCGGUGggagggcuguucgCGGCGAauauaaacGGcGCCGCGGu -3'
miRNA:   3'- -UGUCGUCGCa------------GUCGCU--------CCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 116016 0.68 0.858728
Target:  5'- cGCGGUGGCGaUUGGCGcGGGGACCGgagaGGa -3'
miRNA:   3'- -UGUCGUCGC-AGUCGC-UCCUUGGUg---CC- -5'
11093 5' -56.3 NC_002794.1 + 190984 0.68 0.858728
Target:  5'- aGCAgGCAGCG-CGGCGAcGGcgUCGCGa -3'
miRNA:   3'- -UGU-CGUCGCaGUCGCU-CCuuGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 32269 0.68 0.858728
Target:  5'- gACGGcCGGcCGaUCGGCGAGcGAcgccgccgccGCCGCGGc -3'
miRNA:   3'- -UGUC-GUC-GC-AGUCGCUC-CU----------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 79436 0.68 0.858728
Target:  5'- gGCGGCGGCGgCGGCGAcc-GgCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCUccuUgGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.