Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11093 | 5' | -56.3 | NC_002794.1 | + | 92267 | 0.68 | 0.858728 |
Target: 5'- gGCGGCGGCGcCgGGCGAGGcGCgCAaGGu -3' miRNA: 3'- -UGUCGUCGCaG-UCGCUCCuUG-GUgCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 190984 | 0.68 | 0.858728 |
Target: 5'- aGCAgGCAGCG-CGGCGAcGGcgUCGCGa -3' miRNA: 3'- -UGU-CGUCGCaGUCGCU-CCuuGGUGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 184579 | 0.68 | 0.866159 |
Target: 5'- cGCGGCGGCGgCGGCcacgcgcGGCCGCGGg -3' miRNA: 3'- -UGUCGUCGCaGUCGcucc---UUGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 179966 | 0.68 | 0.866159 |
Target: 5'- gACAGCAGgagCGGC-AGGAGCCaagGCGGu -3' miRNA: 3'- -UGUCGUCgcaGUCGcUCCUUGG---UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 18705 | 0.68 | 0.866159 |
Target: 5'- gGCGGCGGCGgucCGGaCGucGGAGCCgACGa -3' miRNA: 3'- -UGUCGUCGCa--GUC-GCu-CCUUGG-UGCc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 110275 | 0.68 | 0.866159 |
Target: 5'- gACGGCGGCcgccGUCcuCGGGcccgaGAGCCGCGGg -3' miRNA: 3'- -UGUCGUCG----CAGucGCUC-----CUUGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 94010 | 0.68 | 0.873389 |
Target: 5'- cCGGCGGCGggcCGGCGGGuuccGCCgGCGGg -3' miRNA: 3'- uGUCGUCGCa--GUCGCUCcu--UGG-UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 66850 | 0.68 | 0.873389 |
Target: 5'- cGCcGuCGGCG-CGGCGAGG--CCGCGGc -3' miRNA: 3'- -UGuC-GUCGCaGUCGCUCCuuGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 175901 | 0.68 | 0.873389 |
Target: 5'- --cGUuGCGUCAGCuGGGAAcacucCCACGGu -3' miRNA: 3'- uguCGuCGCAGUCGcUCCUU-----GGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 107058 | 0.68 | 0.877627 |
Target: 5'- -aGGCGGCGggcgCGGCGccgccggcaugucGGAGCCgACGGg -3' miRNA: 3'- ugUCGUCGCa---GUCGCu------------CCUUGG-UGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 111598 | 0.68 | 0.880411 |
Target: 5'- -gAGCGGgGUgaucucccaggcCGGCGGGGccGCCGCGGc -3' miRNA: 3'- ugUCGUCgCA------------GUCGCUCCu-UGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 109174 | 0.68 | 0.880411 |
Target: 5'- -gAGCGGCGgUAGCGGcGGAGgCAgCGGg -3' miRNA: 3'- ugUCGUCGCaGUCGCU-CCUUgGU-GCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 87381 | 0.68 | 0.880411 |
Target: 5'- -gGGCGGCG-CGGCcaGAGcGAGCCGCa- -3' miRNA: 3'- ugUCGUCGCaGUCG--CUC-CUUGGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 182196 | 0.68 | 0.880411 |
Target: 5'- gGCcuCGGCGcCGGCGucGcGCCACGGg -3' miRNA: 3'- -UGucGUCGCaGUCGCucCuUGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 56163 | 0.67 | 0.88655 |
Target: 5'- aGCGGCAGCGgcccCGGUgcacguaGAGcaccGGGCCGCGGc -3' miRNA: 3'- -UGUCGUCGCa---GUCG-------CUC----CUUGGUGCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 112543 | 0.67 | 0.887222 |
Target: 5'- -aAGUAGCGgUAGCGGGGcucGCCGcCGGc -3' miRNA: 3'- ugUCGUCGCaGUCGCUCCu--UGGU-GCC- -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 191677 | 0.67 | 0.887222 |
Target: 5'- gGCAGCGGCGgCGGCGuGcccucgucgcGGACCACc- -3' miRNA: 3'- -UGUCGUCGCaGUCGCuC----------CUUGGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 193092 | 0.67 | 0.887222 |
Target: 5'- cGCAGCAGCGUC-GUGAucaccgaagagGGGugCACc- -3' miRNA: 3'- -UGUCGUCGCAGuCGCU-----------CCUugGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 37587 | 0.67 | 0.887222 |
Target: 5'- aACAGaUAGCgGUC-GCGAuGGAGCCGCa- -3' miRNA: 3'- -UGUC-GUCG-CAGuCGCU-CCUUGGUGcc -5' |
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11093 | 5' | -56.3 | NC_002794.1 | + | 120049 | 0.67 | 0.887222 |
Target: 5'- gACGGCGGCGgUGGCG----GCCGCGGa -3' miRNA: 3'- -UGUCGUCGCaGUCGCuccuUGGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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