miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 140189 0.67 0.906345
Target:  5'- gGCGaCGGCGUCGuCGAGGGgcgACC-CGGg -3'
miRNA:   3'- -UGUcGUCGCAGUcGCUCCU---UGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 117302 0.67 0.90268
Target:  5'- uGCGGC-GUGUCgagcgacuggaagguGGCGAGGAuccGCCGCa- -3'
miRNA:   3'- -UGUCGuCGCAG---------------UCGCUCCU---UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 145738 0.67 0.90268
Target:  5'- gGCGGCGGCGcCGGCaucgacggcgaccccGAGcGAgcGCCACGcGg -3'
miRNA:   3'- -UGUCGUCGCaGUCG---------------CUC-CU--UGGUGC-C- -5'
11093 5' -56.3 NC_002794.1 + 41569 0.67 0.900192
Target:  5'- --cGC-GCGUCAG-GAGGAACucccgCACGGa -3'
miRNA:   3'- uguCGuCGCAGUCgCUCCUUG-----GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 102179 0.67 0.900192
Target:  5'- --cGUGGCGcgCGGCGAGG-ACCugGCGGc -3'
miRNA:   3'- uguCGUCGCa-GUCGCUCCuUGG--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 58875 0.67 0.900192
Target:  5'- gGCAGCcguGCGcgccgcgCAGCucGAGGcccgcAACCACGGg -3'
miRNA:   3'- -UGUCGu--CGCa------GUCG--CUCC-----UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 100526 0.67 0.900192
Target:  5'- cCGGuCGGCGgCAcCGAGGAGCaGCGGg -3'
miRNA:   3'- uGUC-GUCGCaGUcGCUCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 41805 0.67 0.900192
Target:  5'- -aAGCAGaCGUcCAGCGAGGcGCCcaGCaGGc -3'
miRNA:   3'- ugUCGUC-GCA-GUCGCUCCuUGG--UG-CC- -5'
11093 5' -56.3 NC_002794.1 + 101514 0.67 0.900192
Target:  5'- uGCGGCAcaCGcCGGCGGGGuGCC-CGGc -3'
miRNA:   3'- -UGUCGUc-GCaGUCGCUCCuUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 138770 0.67 0.900192
Target:  5'- cGCGGCGGuCGguggaGGgGAGGggUCACGc -3'
miRNA:   3'- -UGUCGUC-GCag---UCgCUCCuuGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 137948 0.67 0.899564
Target:  5'- gGCAGCGGCGgaugcguUCGcCGAGGc-CCugGGa -3'
miRNA:   3'- -UGUCGUCGC-------AGUcGCUCCuuGGugCC- -5'
11093 5' -56.3 NC_002794.1 + 32581 0.67 0.893817
Target:  5'- cGCGGCGGUGcCGGgGccGGGGCCGgGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCgCu-CCUUGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 180593 0.67 0.893817
Target:  5'- gGCAGCAGCuGUCcucGCGccgcGGGCCACGa -3'
miRNA:   3'- -UGUCGUCG-CAGu--CGCuc--CUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 37535 0.67 0.893817
Target:  5'- cCGGCuGGCGaaCAGCcgccgGAGGGGCCACGa -3'
miRNA:   3'- uGUCG-UCGCa-GUCG-----CUCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 121398 0.67 0.893817
Target:  5'- cGCGGcCGGCGcCGggaccGCGAccgucgccGGGACCGCGGc -3'
miRNA:   3'- -UGUC-GUCGCaGU-----CGCU--------CCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 120049 0.67 0.887222
Target:  5'- gACGGCGGCGgUGGCG----GCCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuccuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 112543 0.67 0.887222
Target:  5'- -aAGUAGCGgUAGCGGGGcucGCCGcCGGc -3'
miRNA:   3'- ugUCGUCGCaGUCGCUCCu--UGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 191677 0.67 0.887222
Target:  5'- gGCAGCGGCGgCGGCGuGcccucgucgcGGACCACc- -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuC----------CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 193092 0.67 0.887222
Target:  5'- cGCAGCAGCGUC-GUGAucaccgaagagGGGugCACc- -3'
miRNA:   3'- -UGUCGUCGCAGuCGCU-----------CCUugGUGcc -5'
11093 5' -56.3 NC_002794.1 + 37587 0.67 0.887222
Target:  5'- aACAGaUAGCgGUC-GCGAuGGAGCCGCa- -3'
miRNA:   3'- -UGUC-GUCG-CAGuCGCU-CCUUGGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.