miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 9114 0.7 0.783814
Target:  5'- aGCAGCAGUGaggCcgGGCGAcGAACCGCGc -3'
miRNA:   3'- -UGUCGUCGCa--G--UCGCUcCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 12218 0.74 0.567837
Target:  5'- cCGGCGGCGUCGGCGGcgccggcGGcgccguCCGCGGc -3'
miRNA:   3'- uGUCGUCGCAGUCGCU-------CCuu----GGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 13107 0.72 0.648675
Target:  5'- -gAGguGCGuUCGGCGGGGucGCCGCGcGg -3'
miRNA:   3'- ugUCguCGC-AGUCGCUCCu-UGGUGC-C- -5'
11093 5' -56.3 NC_002794.1 + 14282 0.76 0.463912
Target:  5'- uCGGCuggAGCGUCAGCGucGAGgCGCGGg -3'
miRNA:   3'- uGUCG---UCGCAGUCGCucCUUgGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 14495 0.66 0.923446
Target:  5'- cGCGGCGGCGgcccgcgcucgCGGCGcucguGGcgccgcucGGCCACGGc -3'
miRNA:   3'- -UGUCGUCGCa----------GUCGCu----CC--------UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 18705 0.68 0.866159
Target:  5'- gGCGGCGGCGgucCGGaCGucGGAGCCgACGa -3'
miRNA:   3'- -UGUCGUCGCa--GUC-GCu-CCUUGG-UGCc -5'
11093 5' -56.3 NC_002794.1 + 19462 0.74 0.568825
Target:  5'- aGCGGCGGCGgCGGCG-GGAcCCGcCGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuCCUuGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 20982 0.75 0.501034
Target:  5'- gGCAGCGGCGgCGGC-AGcGACCGCGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGcUCcUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 21898 0.66 0.928689
Target:  5'- cGCGGCcuGCGUCGGUG-GuGGCgGCGGa -3'
miRNA:   3'- -UGUCGu-CGCAGUCGCuCcUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 23914 0.84 0.15024
Target:  5'- uGCAGCAGCGUgGGCGAGcGAgcgauccgagcccgGCCGCGGc -3'
miRNA:   3'- -UGUCGUCGCAgUCGCUC-CU--------------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 26651 0.71 0.708217
Target:  5'- gACGGCGGCcggcucGUCGGCGGGGuggagcGCCACc- -3'
miRNA:   3'- -UGUCGUCG------CAGUCGCUCCu-----UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 32269 0.68 0.858728
Target:  5'- gACGGcCGGcCGaUCGGCGAGcGAcgccgccgccGCCGCGGc -3'
miRNA:   3'- -UGUC-GUC-GC-AGUCGCUC-CU----------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 32581 0.67 0.893817
Target:  5'- cGCGGCGGUGcCGGgGccGGGGCCGgGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCgCu-CCUUGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 32849 0.69 0.801578
Target:  5'- uCGGUAGCGgCAGCGGccGAGCCgGCGGg -3'
miRNA:   3'- uGUCGUCGCaGUCGCUc-CUUGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 32879 0.76 0.454856
Target:  5'- gGCGGCGGCGgCGGCGGcaucauggagcGGAACCAguCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU-----------CCUUGGU--GCC- -5'
11093 5' -56.3 NC_002794.1 + 32918 0.74 0.539406
Target:  5'- gGCGGCAGCagGUCGGCG-GGAagcgcucggcgGCCAgGGa -3'
miRNA:   3'- -UGUCGUCG--CAGUCGCuCCU-----------UGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 34092 0.66 0.933704
Target:  5'- -gGGCAGcCGUCgGGCGGcccGGACCGCGa -3'
miRNA:   3'- ugUCGUC-GCAG-UCGCUc--CUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 34280 0.7 0.765527
Target:  5'- gGCGGcCAGCGcCAGCGAccgGGAGCUcuACGa -3'
miRNA:   3'- -UGUC-GUCGCaGUCGCU---CCUUGG--UGCc -5'
11093 5' -56.3 NC_002794.1 + 34846 0.71 0.717973
Target:  5'- -gAGCgGGCGUCggAGCG-GGcGCCGCGGg -3'
miRNA:   3'- ugUCG-UCGCAG--UCGCuCCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 35149 0.68 0.851101
Target:  5'- gGCAGCucGUGUCGacCGAGGAGCaccgCGCGGa -3'
miRNA:   3'- -UGUCGu-CGCAGUc-GCUCCUUG----GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.