miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 36986 0.73 0.628641
Target:  5'- cGCGcGCAG-GUCGGCGAGGcgGACC-CGGu -3'
miRNA:   3'- -UGU-CGUCgCAGUCGCUCC--UUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 37535 0.67 0.893817
Target:  5'- cCGGCuGGCGaaCAGCcgccgGAGGGGCCACGa -3'
miRNA:   3'- uGUCG-UCGCa-GUCG-----CUCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 37587 0.67 0.887222
Target:  5'- aACAGaUAGCgGUC-GCGAuGGAGCCGCa- -3'
miRNA:   3'- -UGUC-GUCG-CAGuCGCU-CCUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 37757 0.73 0.578725
Target:  5'- cGCGGCGGCGcCGGCG-GGAGCgGCc- -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuCCUUGgUGcc -5'
11093 5' -56.3 NC_002794.1 + 37869 0.67 0.906345
Target:  5'- cCGGuCGGCGUCucgggcGGCGGGGGcggugGCgGCGGc -3'
miRNA:   3'- uGUC-GUCGCAG------UCGCUCCU-----UGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 38434 0.69 0.801578
Target:  5'- cAUGGCGGCGggcCGGacuGAGGAGCCggcGCGGc -3'
miRNA:   3'- -UGUCGUCGCa--GUCg--CUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 40117 0.72 0.63866
Target:  5'- -gGGCGcGCGagAGCGGaGAGCCACGGg -3'
miRNA:   3'- ugUCGU-CGCagUCGCUcCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 41569 0.67 0.900192
Target:  5'- --cGC-GCGUCAG-GAGGAACucccgCACGGa -3'
miRNA:   3'- uguCGuCGCAGUCgCUCCUUG-----GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 41805 0.67 0.900192
Target:  5'- -aAGCAGaCGUcCAGCGAGGcGCCcaGCaGGc -3'
miRNA:   3'- ugUCGUC-GCA-GUCGCUCCuUGG--UG-CC- -5'
11093 5' -56.3 NC_002794.1 + 43890 0.68 0.842491
Target:  5'- cCGGCcgucgccGGCGUCucGUGAGGAGCggCGCGGu -3'
miRNA:   3'- uGUCG-------UCGCAGu-CGCUCCUUG--GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 44557 0.66 0.933704
Target:  5'- gGCGGCGGCGcccguugacgUCAcGCGGGaccGAGCCACc- -3'
miRNA:   3'- -UGUCGUCGC----------AGU-CGCUC---CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 45590 0.66 0.917973
Target:  5'- gGCAGCAGgGcCGG-GAacGGGACC-CGGa -3'
miRNA:   3'- -UGUCGUCgCaGUCgCU--CCUUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 46316 0.75 0.51052
Target:  5'- cGCGGCGGCGaCGGCGccGucGCCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCucCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 53617 0.67 0.912273
Target:  5'- cGCcGCAGCGUCGGacggaCGAGGucgGCCGagcCGGc -3'
miRNA:   3'- -UGuCGUCGCAGUC-----GCUCCu--UGGU---GCC- -5'
11093 5' -56.3 NC_002794.1 + 53809 0.73 0.598627
Target:  5'- gGCGGgAGCcUCGGCG-GGAGCCucgGCGGg -3'
miRNA:   3'- -UGUCgUCGcAGUCGCuCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 55302 0.72 0.658676
Target:  5'- gGCGGCGGCGUC-GCGGcGGG--CGCGGg -3'
miRNA:   3'- -UGUCGUCGCAGuCGCU-CCUugGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 55952 0.66 0.933704
Target:  5'- cGCAGCAGgaaCGgguagUAGuCGAGGuggauggcguAGCCGCGGg -3'
miRNA:   3'- -UGUCGUC---GCa----GUC-GCUCC----------UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 56163 0.67 0.88655
Target:  5'- aGCGGCAGCGgcccCGGUgcacguaGAGcaccGGGCCGCGGc -3'
miRNA:   3'- -UGUCGUCGCa---GUCG-------CUC----CUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 58754 0.66 0.938489
Target:  5'- -gGGCAGCu--GGCgGAGGAGCCGCu- -3'
miRNA:   3'- ugUCGUCGcagUCG-CUCCUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 58875 0.67 0.900192
Target:  5'- gGCAGCcguGCGcgccgcgCAGCucGAGGcccgcAACCACGGg -3'
miRNA:   3'- -UGUCGu--CGCa------GUCG--CUCC-----UUGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.