miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 60607 0.66 0.938489
Target:  5'- cGCAGCAGCaaCAGCa--GAACCggACGGg -3'
miRNA:   3'- -UGUCGUCGcaGUCGcucCUUGG--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 63777 0.67 0.912273
Target:  5'- aACAGCugauCGUCgaAGUGcGGAACCGCGa -3'
miRNA:   3'- -UGUCGuc--GCAG--UCGCuCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 65933 0.73 0.578725
Target:  5'- gGCGGUGGCGUCGGCGGcgguaucgucGcGAGCgGCGGc -3'
miRNA:   3'- -UGUCGUCGCAGUCGCU----------C-CUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 66850 0.68 0.873389
Target:  5'- cGCcGuCGGCG-CGGCGAGG--CCGCGGc -3'
miRNA:   3'- -UGuC-GUCGCaGUCGCUCCuuGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 70251 0.75 0.473061
Target:  5'- cGCAGCAGaCGcgCAGCGAcGGAgGCCGCGa -3'
miRNA:   3'- -UGUCGUC-GCa-GUCGCU-CCU-UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 71364 0.66 0.917973
Target:  5'- aGCAGguGCGgCAGCcgccccAGGAccuccuCCACGGu -3'
miRNA:   3'- -UGUCguCGCaGUCGc-----UCCUu-----GGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 72422 0.7 0.783814
Target:  5'- cGCGGCGGaggaggaGcCGGCgGAGGGACCgGCGGc -3'
miRNA:   3'- -UGUCGUCg------CaGUCG-CUCCUUGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 77993 0.66 0.938489
Target:  5'- aACGGCgGGCGUuguucCGGCGGcGGcGCCGuCGGg -3'
miRNA:   3'- -UGUCG-UCGCA-----GUCGCU-CCuUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 79436 0.68 0.858728
Target:  5'- gGCGGCGGCGgCGGCGAcc-GgCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCUccuUgGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 87003 0.75 0.501034
Target:  5'- uCGGCGGCGUggguucCGGCGAGGGuCCGCaGGa -3'
miRNA:   3'- uGUCGUCGCA------GUCGCUCCUuGGUG-CC- -5'
11093 5' -56.3 NC_002794.1 + 87349 0.69 0.835282
Target:  5'- cCAGCAGCGggucCGGCGGcGAGCgGCGu -3'
miRNA:   3'- uGUCGUCGCa---GUCGCUcCUUGgUGCc -5'
11093 5' -56.3 NC_002794.1 + 87381 0.68 0.880411
Target:  5'- -gGGCGGCG-CGGCcaGAGcGAGCCGCa- -3'
miRNA:   3'- ugUCGUCGCaGUCG--CUC-CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 88052 0.69 0.835282
Target:  5'- gACAGUAaacGCG-CGcGCGAGGGggcgggGCCGCGGu -3'
miRNA:   3'- -UGUCGU---CGCaGU-CGCUCCU------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 89675 0.68 0.8557
Target:  5'- cGCGGCGGUGggagggcuguucgCGGCGAauauaaacGGcGCCGCGGu -3'
miRNA:   3'- -UGUCGUCGCa------------GUCGCU--------CCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 89732 0.71 0.708217
Target:  5'- --cGCGGCGUCGGUccuuGGGGAuUCGCGGc -3'
miRNA:   3'- uguCGUCGCAGUCG----CUCCUuGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 92267 0.68 0.858728
Target:  5'- gGCGGCGGCGcCgGGCGAGGcGCgCAaGGu -3'
miRNA:   3'- -UGUCGUCGCaG-UCGCUCCuUG-GUgCC- -5'
11093 5' -56.3 NC_002794.1 + 92315 0.66 0.943048
Target:  5'- -gGGC-GCGggCGGCGGGGGcCCggGCGGg -3'
miRNA:   3'- ugUCGuCGCa-GUCGCUCCUuGG--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 94010 0.68 0.873389
Target:  5'- cCGGCGGCGggcCGGCGGGuuccGCCgGCGGg -3'
miRNA:   3'- uGUCGUCGCa--GUCGCUCcu--UGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 94048 0.75 0.473061
Target:  5'- aGCGGCGGCGgugcgggggCGGCGGGGGGCgAgGGc -3'
miRNA:   3'- -UGUCGUCGCa--------GUCGCUCCUUGgUgCC- -5'
11093 5' -56.3 NC_002794.1 + 94149 0.66 0.923446
Target:  5'- cGCGGCGGCGcuggaCGGUGGGGGGg-ACGGg -3'
miRNA:   3'- -UGUCGUCGCa----GUCGCUCCUUggUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.