miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 94217 0.66 0.938489
Target:  5'- gACGGUGGCGgcgacgGGCGGGcGGGCCggugACGGa -3'
miRNA:   3'- -UGUCGUCGCag----UCGCUC-CUUGG----UGCC- -5'
11093 5' -56.3 NC_002794.1 + 94470 0.71 0.698399
Target:  5'- gACGGCAaCGgCGGCGGcGGAcgcgGCCGCGGg -3'
miRNA:   3'- -UGUCGUcGCaGUCGCU-CCU----UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 95781 0.73 0.588661
Target:  5'- gGCGGCcggggcgagaGGCG-CGGCgGAGGAACCGgGGg -3'
miRNA:   3'- -UGUCG----------UCGCaGUCG-CUCCUUGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 95837 0.76 0.428278
Target:  5'- aGCGGCGGCGgCGGcCGGGGAgGCgGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUC-GCUCCU-UGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 100457 0.66 0.917973
Target:  5'- gGCGGCGGCGcCuucccgguGGCGGaGAACCugGa -3'
miRNA:   3'- -UGUCGUCGCaG--------UCGCUcCUUGGugCc -5'
11093 5' -56.3 NC_002794.1 + 100526 0.67 0.900192
Target:  5'- cCGGuCGGCGgCAcCGAGGAGCaGCGGg -3'
miRNA:   3'- uGUC-GUCGCaGUcGCUCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 101249 0.73 0.588661
Target:  5'- cCGGC-GCG-CAGCGGGGGGCCGCc- -3'
miRNA:   3'- uGUCGuCGCaGUCGCUCCUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 101279 0.71 0.737267
Target:  5'- cCGGUGGCGgCGGCGGGGAggagacgacguACCAgGGc -3'
miRNA:   3'- uGUCGUCGCaGUCGCUCCU-----------UGGUgCC- -5'
11093 5' -56.3 NC_002794.1 + 101514 0.67 0.900192
Target:  5'- uGCGGCAcaCGcCGGCGGGGuGCC-CGGc -3'
miRNA:   3'- -UGUCGUc-GCaGUCGCUCCuUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 101640 0.69 0.827103
Target:  5'- --cGCgAGCGUgGGCGGGcGGGCgGCGGu -3'
miRNA:   3'- uguCG-UCGCAgUCGCUC-CUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 101815 0.66 0.928689
Target:  5'- cGCAGCGGCG-CGccgugcGCGAGGccaUGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGU------CGCUCCuugGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 102179 0.67 0.900192
Target:  5'- --cGUGGCGcgCGGCGAGG-ACCugGCGGc -3'
miRNA:   3'- uguCGUCGCa-GUCGCUCCuUGG--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 103900 0.66 0.933704
Target:  5'- -gAGCAGCGg-GGCGAGaacGCCGCGc -3'
miRNA:   3'- ugUCGUCGCagUCGCUCcu-UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 104467 0.73 0.608617
Target:  5'- -gGGCGGCGUguGC-AGGAugcgggcgGCCACGGc -3'
miRNA:   3'- ugUCGUCGCAguCGcUCCU--------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 107058 0.68 0.877627
Target:  5'- -aGGCGGCGggcgCGGCGccgccggcaugucGGAGCCgACGGg -3'
miRNA:   3'- ugUCGUCGCa---GUCGCu------------CCUUGG-UGCC- -5'
11093 5' -56.3 NC_002794.1 + 107241 0.71 0.698399
Target:  5'- -gGGCGGCGUC-GCGGaccuggcccggcGGAGCCGCGc -3'
miRNA:   3'- ugUCGUCGCAGuCGCU------------CCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 107536 0.7 0.774731
Target:  5'- gGC-GCGGCGcCGGCGGcGAcgACCGCGGu -3'
miRNA:   3'- -UGuCGUCGCaGUCGCUcCU--UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 108332 0.68 0.843283
Target:  5'- gACGGCGGCG-CAG-GAGGAggugGCggaGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCgCUCCU----UGg--UGCC- -5'
11093 5' -56.3 NC_002794.1 + 109174 0.68 0.880411
Target:  5'- -gAGCGGCGgUAGCGGcGGAGgCAgCGGg -3'
miRNA:   3'- ugUCGUCGCaGUCGCU-CCUUgGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 109936 0.66 0.933704
Target:  5'- cCAGUucugGGgGUCAGgGAGG-GCCGgGGg -3'
miRNA:   3'- uGUCG----UCgCAGUCgCUCCuUGGUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.