miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 193745 0.68 0.843283
Target:  5'- --cGCGGCuUCGGCGAGcGACCGcCGGc -3'
miRNA:   3'- uguCGUCGcAGUCGCUCcUUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 193092 0.67 0.887222
Target:  5'- cGCAGCAGCGUC-GUGAucaccgaagagGGGugCACc- -3'
miRNA:   3'- -UGUCGUCGCAGuCGCU-----------CCUugGUGcc -5'
11093 5' -56.3 NC_002794.1 + 191677 0.67 0.887222
Target:  5'- gGCAGCGGCGgCGGCGuGcccucgucgcGGACCACc- -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuC----------CUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 190984 0.68 0.858728
Target:  5'- aGCAgGCAGCG-CGGCGAcGGcgUCGCGa -3'
miRNA:   3'- -UGU-CGUCGCaGUCGCU-CCuuGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 189839 0.7 0.783814
Target:  5'- cACAGCGGgGUCucGGcCGcGGAGCCGuCGGc -3'
miRNA:   3'- -UGUCGUCgCAG--UC-GCuCCUUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 188255 0.71 0.698399
Target:  5'- gGCGGCGGCGgUAGCGGcGGGCCggguaGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCUcCUUGG-----UGCC- -5'
11093 5' -56.3 NC_002794.1 + 186286 0.66 0.933704
Target:  5'- gGCGGCAccGCGgccaGGCGGccGGucGCCGCGGc -3'
miRNA:   3'- -UGUCGU--CGCag--UCGCU--CCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 185475 0.74 0.539406
Target:  5'- -gGGCGGCGgccgCGGCGAgGGGACCGCc- -3'
miRNA:   3'- ugUCGUCGCa---GUCGCU-CCUUGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 185183 0.66 0.933704
Target:  5'- cGCGGuCGGCGcggUCGGCGcGGucAUCGCGGc -3'
miRNA:   3'- -UGUC-GUCGC---AGUCGCuCCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 185044 0.72 0.678611
Target:  5'- uACGGCAGCaaCAGCGuGGucugcagccGCCGCGGc -3'
miRNA:   3'- -UGUCGUCGcaGUCGCuCCu--------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 184811 0.69 0.835282
Target:  5'- uCAGCAGCGUCA-CGGGGca-CGCGu -3'
miRNA:   3'- uGUCGUCGCAGUcGCUCCuugGUGCc -5'
11093 5' -56.3 NC_002794.1 + 184579 0.68 0.866159
Target:  5'- cGCGGCGGCGgCGGCcacgcgcGGCCGCGGg -3'
miRNA:   3'- -UGUCGUCGCaGUCGcucc---UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 184031 0.66 0.943048
Target:  5'- cACGGCAccGCGcgCAGCGcgcGGucgcgGGCCGCGGc -3'
miRNA:   3'- -UGUCGU--CGCa-GUCGCu--CC-----UUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 182473 0.66 0.930723
Target:  5'- --cGCGGCGUCAGCaGAuacagucccaaGGGGCCggucagguacgcguaGCGGa -3'
miRNA:   3'- uguCGUCGCAGUCG-CU-----------CCUUGG---------------UGCC- -5'
11093 5' -56.3 NC_002794.1 + 182196 0.68 0.880411
Target:  5'- gGCcuCGGCGcCGGCGucGcGCCACGGg -3'
miRNA:   3'- -UGucGUCGCaGUCGCucCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 182108 0.66 0.917973
Target:  5'- cGCGGUAGCGgaucCGGCGccagccGAACCGCGc -3'
miRNA:   3'- -UGUCGUCGCa---GUCGCuc----CUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 181431 0.73 0.618624
Target:  5'- --cGCgaAGcCGUCGGCGAGGGGCCGCccGGa -3'
miRNA:   3'- uguCG--UC-GCAGUCGCUCCUUGGUG--CC- -5'
11093 5' -56.3 NC_002794.1 + 180684 0.68 0.850327
Target:  5'- cCGGCcgcucccGGCGccCGGCGGGcGGACCAUGGc -3'
miRNA:   3'- uGUCG-------UCGCa-GUCGCUC-CUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 180593 0.67 0.893817
Target:  5'- gGCAGCAGCuGUCcucGCGccgcGGGCCACGa -3'
miRNA:   3'- -UGUCGUCG-CAGu--CGCuc--CUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 180154 0.78 0.346753
Target:  5'- cGCAGCAGCaGUUGGUGGGGAuaGCCGUGGg -3'
miRNA:   3'- -UGUCGUCG-CAGUCGCUCCU--UGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.