miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 179966 0.68 0.866159
Target:  5'- gACAGCAGgagCGGC-AGGAGCCaagGCGGu -3'
miRNA:   3'- -UGUCGUCgcaGUCGcUCCUUGG---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 179681 0.69 0.801578
Target:  5'- cGCGGCGGCGaCGGUGGcGGcGGCgACGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU-CC-UUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 179240 0.7 0.774731
Target:  5'- aACAGguCGGCGUCGGCGAGaccGCCGCc- -3'
miRNA:   3'- -UGUC--GUCGCAGUCGCUCcu-UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 175901 0.68 0.873389
Target:  5'- --cGUuGCGUCAGCuGGGAAcacucCCACGGu -3'
miRNA:   3'- uguCGuCGCAGUCGcUCCUU-----GGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 156457 0.7 0.774731
Target:  5'- -aGGCGGUugGUUagggGGCGGGGGACgACGGg -3'
miRNA:   3'- ugUCGUCG--CAG----UCGCUCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 154324 0.75 0.491626
Target:  5'- -gAGCGGCGUCGGuCGucccGGGuGCCGCGGc -3'
miRNA:   3'- ugUCGUCGCAGUC-GC----UCCuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 149280 0.66 0.933704
Target:  5'- cCGGCGGCG-CGGCGGcucGCuCACGGg -3'
miRNA:   3'- uGUCGUCGCaGUCGCUccuUG-GUGCC- -5'
11093 5' -56.3 NC_002794.1 + 148120 0.72 0.63866
Target:  5'- gACGGuCGGUGUCgGGCGcGGGGCCGcCGGg -3'
miRNA:   3'- -UGUC-GUCGCAG-UCGCuCCUUGGU-GCC- -5'
11093 5' -56.3 NC_002794.1 + 147622 0.66 0.943048
Target:  5'- -uGGCAGgCGUCGGaGAGGGuCCGCu- -3'
miRNA:   3'- ugUCGUC-GCAGUCgCUCCUuGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 147044 0.69 0.800703
Target:  5'- -aAGC--CGUCGGCGGccggucuaaggacGGAGCCGCGGg -3'
miRNA:   3'- ugUCGucGCAGUCGCU-------------CCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 145738 0.67 0.90268
Target:  5'- gGCGGCGGCGcCGGCaucgacggcgaccccGAGcGAgcGCCACGcGg -3'
miRNA:   3'- -UGUCGUCGCaGUCG---------------CUC-CU--UGGUGC-C- -5'
11093 5' -56.3 NC_002794.1 + 142959 0.71 0.688527
Target:  5'- uCGGCGGCGUCgAGCuccucgucGAGGGGCUGCGu -3'
miRNA:   3'- uGUCGUCGCAG-UCG--------CUCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 142403 0.66 0.938489
Target:  5'- uGCAgGCGGCGUCGGCGGcgccGGG--CGCGa -3'
miRNA:   3'- -UGU-CGUCGCAGUCGCU----CCUugGUGCc -5'
11093 5' -56.3 NC_002794.1 + 142358 0.73 0.628641
Target:  5'- -aGGCGGCGgaggCGGCGgaggcggaGGGAGCgGCGGa -3'
miRNA:   3'- ugUCGUCGCa---GUCGC--------UCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 142320 0.71 0.727659
Target:  5'- gGCGGCGGCGcaGGCGGcGGAgGCgGCGGa -3'
miRNA:   3'- -UGUCGUCGCagUCGCU-CCU-UGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 142218 0.85 0.140375
Target:  5'- gGCAGCGGCGgu-GCGGGGAGCgGCGGa -3'
miRNA:   3'- -UGUCGUCGCaguCGCUCCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 142171 0.78 0.331839
Target:  5'- cCGGCAGCGUCGgcagcGCGAGGAGCgGCa- -3'
miRNA:   3'- uGUCGUCGCAGU-----CGCUCCUUGgUGcc -5'
11093 5' -56.3 NC_002794.1 + 140189 0.67 0.906345
Target:  5'- gGCGaCGGCGUCGuCGAGGGgcgACC-CGGg -3'
miRNA:   3'- -UGUcGUCGCAGUcGCUCCU---UGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 140028 0.66 0.928689
Target:  5'- cGCGGCccccGCGggCGGCG-GGAGaCACGGa -3'
miRNA:   3'- -UGUCGu---CGCa-GUCGCuCCUUgGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 138770 0.67 0.900192
Target:  5'- cGCGGCGGuCGguggaGGgGAGGggUCACGc -3'
miRNA:   3'- -UGUCGUC-GCag---UCgCUCCuuGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.