miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11093 5' -56.3 NC_002794.1 + 137948 0.67 0.899564
Target:  5'- gGCAGCGGCGgaugcguUCGcCGAGGc-CCugGGa -3'
miRNA:   3'- -UGUCGUCGC-------AGUcGCUCCuuGGugCC- -5'
11093 5' -56.3 NC_002794.1 + 137788 0.68 0.851101
Target:  5'- aGguGCAG-GUCGcUGAGGAGCCGCaGGa -3'
miRNA:   3'- -UguCGUCgCAGUcGCUCCUUGGUG-CC- -5'
11093 5' -56.3 NC_002794.1 + 137719 0.66 0.927659
Target:  5'- cCGGCaacuuggAGCGUCAgGCGAugggccgacgcuuGGAACgGCGGc -3'
miRNA:   3'- uGUCG-------UCGCAGU-CGCU-------------CCUUGgUGCC- -5'
11093 5' -56.3 NC_002794.1 + 136511 0.66 0.928689
Target:  5'- uCAGCAGCGg-GGCGAGGuAGagAUGGu -3'
miRNA:   3'- uGUCGUCGCagUCGCUCC-UUggUGCC- -5'
11093 5' -56.3 NC_002794.1 + 136460 0.69 0.835282
Target:  5'- -gGGuCAG-GUCGGCGAGGuucGCCGCGu -3'
miRNA:   3'- ugUC-GUCgCAGUCGCUCCu--UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 129941 0.7 0.756209
Target:  5'- gACGGCGGCGgCGGCGGcucuGGAgACCuCGGu -3'
miRNA:   3'- -UGUCGUCGCaGUCGCU----CCU-UGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 126672 0.7 0.774731
Target:  5'- gGCcGCGGCGagggcccgaaUCGGgGAGGGaggggcGCCGCGGa -3'
miRNA:   3'- -UGuCGUCGC----------AGUCgCUCCU------UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 123321 0.67 0.912273
Target:  5'- aGCAGCAGgGgccgCAGCuGGGggUgGCGu -3'
miRNA:   3'- -UGUCGUCgCa---GUCGcUCCuuGgUGCc -5'
11093 5' -56.3 NC_002794.1 + 121528 0.66 0.943048
Target:  5'- cCGGCGGuCGUCu-CGAcGGAGCC-CGGu -3'
miRNA:   3'- uGUCGUC-GCAGucGCU-CCUUGGuGCC- -5'
11093 5' -56.3 NC_002794.1 + 121398 0.67 0.893817
Target:  5'- cGCGGcCGGCGcCGggaccGCGAccgucgccGGGACCGCGGc -3'
miRNA:   3'- -UGUC-GUCGCaGU-----CGCU--------CCUUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 120875 0.74 0.558968
Target:  5'- uCGGCuGGUGUCcgaacGGCGAGGucACCGCGGg -3'
miRNA:   3'- uGUCG-UCGCAG-----UCGCUCCu-UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 120079 0.66 0.938021
Target:  5'- cGCGGCGGUGgCGGCGAcGAccgugccgagcgcGCCGCGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGCUcCU-------------UGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 120049 0.67 0.887222
Target:  5'- gACGGCGGCGgUGGCG----GCCGCGGa -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuccuUGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 119491 0.69 0.822114
Target:  5'- uCGGCuGCGUCcucggggucgucggcGGCGcGGAgccgGCCGCGGa -3'
miRNA:   3'- uGUCGuCGCAG---------------UCGCuCCU----UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 118272 0.82 0.193879
Target:  5'- gGCGGCGGCGcCGGCGucGGGGACCGCGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGC--UCCUUGGUGCc -5'
11093 5' -56.3 NC_002794.1 + 117980 0.66 0.938489
Target:  5'- cCAGCuGGUGguaCAGCaGGGGcuGCCGCGGc -3'
miRNA:   3'- uGUCG-UCGCa--GUCGcUCCU--UGGUGCC- -5'
11093 5' -56.3 NC_002794.1 + 117302 0.67 0.90268
Target:  5'- uGCGGC-GUGUCgagcgacuggaagguGGCGAGGAuccGCCGCa- -3'
miRNA:   3'- -UGUCGuCGCAG---------------UCGCUCCU---UGGUGcc -5'
11093 5' -56.3 NC_002794.1 + 116951 0.8 0.276952
Target:  5'- gGCGGCGGCGUCGGCG-GGcGCaggaACGGg -3'
miRNA:   3'- -UGUCGUCGCAGUCGCuCCuUGg---UGCC- -5'
11093 5' -56.3 NC_002794.1 + 116862 0.66 0.938021
Target:  5'- uGCGGCGGCcgugucgcgcucGUCAGgGGGGcGCCggcgccgucuccgGCGGc -3'
miRNA:   3'- -UGUCGUCG------------CAGUCgCUCCuUGG-------------UGCC- -5'
11093 5' -56.3 NC_002794.1 + 116132 0.69 0.792765
Target:  5'- cGCGGCGGCGgCGGCG-GcGGCCAgGGc -3'
miRNA:   3'- -UGUCGUCGCaGUCGCuCcUUGGUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.